Griffitts:Stock solutions
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==Antibiotics== | ==Antibiotics== | ||
===Ampicillin (40 mL)=== | ===Ampicillin (40 mL)=== | ||
| + | For a stock solution of 25 mg/mL: | ||
* 1 g [[Wikipedia:Ampicillin|Ampicillin]] | * 1 g [[Wikipedia:Ampicillin|Ampicillin]] | ||
* 40 mL ddH<sub>2</sub>O | * 40 mL ddH<sub>2</sub>O | ||
| Line 9: | Line 10: | ||
NOTE: Store at 4°C | NOTE: Store at 4°C | ||
===Chloramphenicol (40 mL)=== | ===Chloramphenicol (40 mL)=== | ||
| + | For a stock solution of 7.5 mg/mL: | ||
* 300 mg [[Wikipedia:Chloramphenicol|Chloramphenicol]] | * 300 mg [[Wikipedia:Chloramphenicol|Chloramphenicol]] | ||
* 40 mL 50% [[Wikipedia:Ethanol|Ethanol]] | * 40 mL 50% [[Wikipedia:Ethanol|Ethanol]] | ||
| Line 14: | Line 16: | ||
NOTE: Store at 4°C | NOTE: Store at 4°C | ||
===Erythromycin (20 mL)=== | ===Erythromycin (20 mL)=== | ||
| - | * | + | For a stock solution of 10 mg/mL: |
| + | * 200 mg [[Wikipedia:Erythromycin|Erythromycin]] | ||
* 20 mL 100% ethanol (in fume hood) | * 20 mL 100% ethanol (in fume hood) | ||
* Do '''not''' filter sterilize—the ethanol may dissolve the filter | * Do '''not''' filter sterilize—the ethanol may dissolve the filter | ||
NOTE: Store at –20°C | NOTE: Store at –20°C | ||
===Gentamicin (40 mL)=== | ===Gentamicin (40 mL)=== | ||
| + | For a stock solution of 7.5 mg/mL: | ||
* 300 mg [[Wikipedia:Gentamicin|Gentamicin]] | * 300 mg [[Wikipedia:Gentamicin|Gentamicin]] | ||
* 40 mL ddH<sub>2</sub>O | * 40 mL ddH<sub>2</sub>O | ||
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NOTE: Store at 4°C | NOTE: Store at 4°C | ||
===Hygromycin (40 mL)=== | ===Hygromycin (40 mL)=== | ||
| + | For a stock solution of 5 mg/mL: | ||
* 200 mg [[Wikipedia:Hygromycin|Hygromycin]] | * 200 mg [[Wikipedia:Hygromycin|Hygromycin]] | ||
* 40 mL ddH<sub>2</sub>O | * 40 mL ddH<sub>2</sub>O | ||
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NOTE: Store at 4°C | NOTE: Store at 4°C | ||
===Kanamycin (40 mL)=== | ===Kanamycin (40 mL)=== | ||
| + | For a stock solution of 7.5 mg/mL: | ||
* 300 mg [[Wikipedia:Kanamycin|Kanamycin]] | * 300 mg [[Wikipedia:Kanamycin|Kanamycin]] | ||
* 40 mL ddH<sub>2</sub>O | * 40 mL ddH<sub>2</sub>O | ||
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NOTE: Store at 4°C | NOTE: Store at 4°C | ||
===Nalidixic acid (30 mL)=== | ===Nalidixic acid (30 mL)=== | ||
| + | For a stock solution of 30 mg/mL: | ||
* 900 mg [[Wikipedia:Nalidixic Acid|Nalidixic Acid]] | * 900 mg [[Wikipedia:Nalidixic Acid|Nalidixic Acid]] | ||
* 360 mg NaOH | * 360 mg NaOH | ||
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NOTE: Store at 4°C | NOTE: Store at 4°C | ||
===Neomycin (40 mL)=== | ===Neomycin (40 mL)=== | ||
| + | For a stock solution of 25 mg/mL: | ||
* 1 g [[Wikipedia:Neomycin|Neomycin]] | * 1 g [[Wikipedia:Neomycin|Neomycin]] | ||
| + | * 40 mL ddH<sub>2</sub>O | ||
| + | * Filter sterilize | ||
| + | NOTE: Store at 4°C | ||
| + | ===Phosphomycin=== | ||
| + | For a stock solution of 25 mg/mL: | ||
| + | * 1 g [[Wikipedia:Fosfomycin|Phosphomycin]] | ||
* 40 mL ddH<sub>2</sub>O | * 40 mL ddH<sub>2</sub>O | ||
* Filter sterilize | * Filter sterilize | ||
NOTE: Store at 4°C | NOTE: Store at 4°C | ||
===Rifampicin (20 mL)=== | ===Rifampicin (20 mL)=== | ||
| + | For a stock solution of 50 mg/mL: | ||
* 1 g [[Wikipedia:Rifampicin|Rifampicin]] | * 1 g [[Wikipedia:Rifampicin|Rifampicin]] | ||
* 20 mL N,N-dimethylformamide (DMF; in fume hood) | * 20 mL N,N-dimethylformamide (DMF; in fume hood) | ||
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NOTE: Store at –20°C | NOTE: Store at –20°C | ||
===Spectinomycin (40 mL)=== | ===Spectinomycin (40 mL)=== | ||
| + | For a stock solution of 20 mg/mL: | ||
* 800 mg [[Wikipedia:Spectinomycin|Spectinomycin]] | * 800 mg [[Wikipedia:Spectinomycin|Spectinomycin]] | ||
* 40 mL ddH<sub>2</sub>O | * 40 mL ddH<sub>2</sub>O | ||
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NOTE: Store at 4°C | NOTE: Store at 4°C | ||
===Streptomycin (40 mL)=== | ===Streptomycin (40 mL)=== | ||
| + | For a stock solution of 50 mg/mL: | ||
* 2 g [[Wikipedia:Streptomycin|Streptomycin]] | * 2 g [[Wikipedia:Streptomycin|Streptomycin]] | ||
* 40 mL ddH<sub>2</sub>O | * 40 mL ddH<sub>2</sub>O | ||
* Filter sterilize | * Filter sterilize | ||
NOTE: Store at 4°C | NOTE: Store at 4°C | ||
| + | |||
===Tetracycline (40 mL)=== | ===Tetracycline (40 mL)=== | ||
| + | For a stock solution of 2.5 mg/mL: | ||
* 100 mg [[Wikipedia:Tetracycline|Tetracycline]] | * 100 mg [[Wikipedia:Tetracycline|Tetracycline]] | ||
* 40 mL 50% [[Wikipedia:Ethanol|Ethanol]] | * 40 mL 50% [[Wikipedia:Ethanol|Ethanol]] | ||
NOTE: Do '''not''' filter sterilize—the ethanol may dissolve the filter<br> | NOTE: Do '''not''' filter sterilize—the ethanol may dissolve the filter<br> | ||
| + | NOTE: Store at 4°C | ||
| + | ===Triclosan (40 mL)=== | ||
| + | For a stock solution of 10 mg/mL: | ||
| + | * 400 mg [[Wikipedia:Triclosan|Triclosan]] | ||
| + | * 40 mL 100% [[Wikipedia:Ethanol|Ethanol]] | ||
| + | NOTE: Do '''not''' filter sterilize—the ethanol may dissolve the filter<br> | ||
| + | NOTE: Store at 4°C | ||
| + | |||
| + | ===Trimethoprim (40 mL)=== | ||
| + | For a stock solution of 6.25 mg/mL: | ||
| + | * 250 mg [[Wikipedia:Trimethoprim|Trimethoprim]] | ||
| + | * 40 mL 100% [[Wikipedia:Dimethyl sulfoxide|DMSO]] | ||
| + | NOTE: Do '''not''' filter sterilize—the DMSO may dissolve the filter<br> | ||
NOTE: Store at 4°C | NOTE: Store at 4°C | ||
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! width="120" style="background:#efefef;" | ''E. coli'' | ! width="120" style="background:#efefef;" | ''E. coli'' | ||
! width="120" style="background:#efefef;" | ''S. meliloti'' | ! width="120" style="background:#efefef;" | ''S. meliloti'' | ||
| - | ! width=" | + | ! width="90" style="background:#efefef;" | Solvent |
| - | ! width=" | + | ! width="90" style="background:#efefef;" | Storage |
|- | |- | ||
| Ampicillin | | Ampicillin | ||
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| 30 μg/mL (250X) | | 30 μg/mL (250X) | ||
| N/A | | N/A | ||
| - | | EtOH | + | | 50% EtOH |
| 4°C | | 4°C | ||
|- | |- | ||
| Erythromycin | | Erythromycin | ||
| - | | | + | | Er |
| <center>(none)</center> | | <center>(none)</center> | ||
| - | | | + | | 10 mg/mL |
| N/A | | N/A | ||
| N/A | | N/A | ||
| - | | EtOH | + | | 100% EtOH |
| –20°C | | –20°C | ||
|- | |- | ||
| Line 128: | Line 160: | ||
| 7.5 mg/mL | | 7.5 mg/mL | ||
| 30 μg/mL (250X) | | 30 μg/mL (250X) | ||
| - | | | + | | '''Use Neomycin''' |
| ddH<sub>2</sub>O | | ddH<sub>2</sub>O | ||
| 4°C | | 4°C | ||
| Line 135: | Line 167: | ||
| Na | | Na | ||
| <center>(none)</center> | | <center>(none)</center> | ||
| - | | | + | | 30 mg/mL |
| 30 μg/mL (1000X) | | 30 μg/mL (1000X) | ||
| N/A | | N/A | ||
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| Nm | | Nm | ||
! style="background:#008000;" | <font color=white>'''GREEN'''</font> | ! style="background:#008000;" | <font color=white>'''GREEN'''</font> | ||
| + | | 25 mg/mL | ||
| + | | '''Use Kanamycin''' | ||
| + | | 100 μg/mL (250X) | ||
| + | | ddH<sub>2</sub>O | ||
| + | | 4°C | ||
| + | |- | ||
| + | | Phosphomycin | ||
| + | | Pm | ||
| + | | <center>(none)</center> | ||
| 25 mg/mL | | 25 mg/mL | ||
| N/A | | N/A | ||
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|- | |- | ||
| Rifampicin | | Rifampicin | ||
| - | | | + | | Rf |
| <center>(none)</center> | | <center>(none)</center> | ||
| 50 mg/mL | | 50 mg/mL | ||
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! style="background:#FF0000;" | <font color=white>'''RED'''</font> | ! style="background:#FF0000;" | <font color=white>'''RED'''</font> | ||
| 2.5 mg/mL | | 2.5 mg/mL | ||
| - | | | + | | 5 μg/mL (500X) |
| - | | | + | | 5 μg/mL (500X) |
| - | | EtOH | + | | 50% EtOH |
| 4°C | | 4°C | ||
|- | |- | ||
| Triclosan | | Triclosan | ||
| - | | | + | | Tr |
| <center>(none)</center> | | <center>(none)</center> | ||
| - | | | + | | 10 mg/mL |
| N/A | | N/A | ||
| N/A | | N/A | ||
| - | | EtOH | + | | 100% EtOH |
| + | | 4°C | ||
| + | |- | ||
| + | | Trimethoprim | ||
| + | | Tm | ||
| + | | <center>(none)</center> | ||
| + | | 6.25 mg/mL | ||
| + | | N/A | ||
| + | | 12.5 μg/mL (500X)<br><center>or</center>25 μg/mL (250X) | ||
| + | | 100% DMSO | ||
| 4°C | | 4°C | ||
|} | |} | ||
| Line 223: | Line 273: | ||
* 1/50 dilution of [[Griffitts:Common buffers#2% bromophenol blue|2% bromophenol blue]] | * 1/50 dilution of [[Griffitts:Common buffers#2% bromophenol blue|2% bromophenol blue]] | ||
===DNA ladder=== | ===DNA ladder=== | ||
| - | * | + | * 140 μL ddH<sub>2</sub>0 |
| - | * | + | * 40 μL [[Griffitts:Common buffers#8X DNA loading|8X DNA loading]] buffer |
* 20 μL 1 kb ladder from NEB | * 20 μL 1 kb ladder from NEB | ||
* 2 μL [[Griffitts:Common buffers#0.25 M EDTA (75 mL)|0.25 M EDTA]]<br> | * 2 μL [[Griffitts:Common buffers#0.25 M EDTA (75 mL)|0.25 M EDTA]]<br> | ||
Note: use 5 μL per lane; 3kb band = 60 ng | Note: use 5 μL per lane; 3kb band = 60 ng | ||
| + | |||
| + | ===Ethidium Bromide (1 mL)=== | ||
| + | * 100 μL 10 mg/mL ethidium bromide | ||
| + | ** This is stored on the middle shelf of the refrigerator on the right | ||
| + | * 900 μL ddH<sub>2</sub>O | ||
| + | Note: use 8 μL per 50 mL gel<br> | ||
| + | WARNING: Always wear gloves when handling ethidium bromide | ||
| + | |||
===Ethidium Bromide (10 mL)=== | ===Ethidium Bromide (10 mL)=== | ||
| - | * 10 mL ddH<sub>2</sub> | + | * 10 mL ddH<sub>2</sub>O |
* 10 mg ethidium bromide<br> | * 10 mg ethidium bromide<br> | ||
| - | Note: use 8 μL per 50 mL gel | + | Note: use 8 μL per 50 mL gel<br> |
| + | WARNING: Always wear gloves when handling ethidium bromide | ||
==Media Additives== | ==Media Additives== | ||
| Line 245: | Line 304: | ||
===1 M Sodium Citrate (40 mL)=== | ===1 M Sodium Citrate (40 mL)=== | ||
| - | * | + | * 35 mL ddH<sub>2</sub>O |
* 11.76 g sodium citrate tribasic dihydrate (Na<sub>3</sub>C<sub>6</sub>H<sub>5</sub>O<sub>7</sub>·2H<sub>2</sub>O) | * 11.76 g sodium citrate tribasic dihydrate (Na<sub>3</sub>C<sub>6</sub>H<sub>5</sub>O<sub>7</sub>·2H<sub>2</sub>O) | ||
| - | * pH to 5.7 with HCl | + | * pH to 5.7 with HCl (~1 mL) |
| + | * QS to 40 mL with ddH<sub>2</sub>O | ||
Sterile filter | Sterile filter | ||
Revision as of 18:41, 29 February 2012
Antibiotics
Ampicillin (40 mL)
For a stock solution of 25 mg/mL:
- 1 g Ampicillin
- 40 mL ddH2O
- Filter sterilize
NOTE: Store at 4°C
Chloramphenicol (40 mL)
For a stock solution of 7.5 mg/mL:
- 300 mg Chloramphenicol
- 40 mL 50% Ethanol
NOTE: Do not filter sterilize—the ethanol may dissolve the filter
NOTE: Store at 4°C
Erythromycin (20 mL)
For a stock solution of 10 mg/mL:
- 200 mg Erythromycin
- 20 mL 100% ethanol (in fume hood)
- Do not filter sterilize—the ethanol may dissolve the filter
NOTE: Store at –20°C
Gentamicin (40 mL)
For a stock solution of 7.5 mg/mL:
- 300 mg Gentamicin
- 40 mL ddH2O
- Filter sterilize
NOTE: Store at 4°C
Hygromycin (40 mL)
For a stock solution of 5 mg/mL:
- 200 mg Hygromycin
- 40 mL ddH2O
- Filter sterilize
NOTE: Store at 4°C
Kanamycin (40 mL)
For a stock solution of 7.5 mg/mL:
- 300 mg Kanamycin
- 40 mL ddH2O
- Filter sterilize
NOTE: Store at 4°C
Nalidixic acid (30 mL)
For a stock solution of 30 mg/mL:
- 900 mg Nalidixic Acid
- 360 mg NaOH
- 30 mL ddH2O
- Filter sterilize
NOTE: Store at 4°C
Neomycin (40 mL)
For a stock solution of 25 mg/mL:
- 1 g Neomycin
- 40 mL ddH2O
- Filter sterilize
NOTE: Store at 4°C
Phosphomycin
For a stock solution of 25 mg/mL:
- 1 g Phosphomycin
- 40 mL ddH2O
- Filter sterilize
NOTE: Store at 4°C
Rifampicin (20 mL)
For a stock solution of 50 mg/mL:
- 1 g Rifampicin
- 20 mL N,N-dimethylformamide (DMF; in fume hood)
NOTE: Do not filter sterilize—the DMF will dissolve the filter
NOTE: Store at –20°C
Spectinomycin (40 mL)
For a stock solution of 20 mg/mL:
- 800 mg Spectinomycin
- 40 mL ddH2O
- Filter sterilize
NOTE: Store at 4°C
Streptomycin (40 mL)
For a stock solution of 50 mg/mL:
- 2 g Streptomycin
- 40 mL ddH2O
- Filter sterilize
NOTE: Store at 4°C
Tetracycline (40 mL)
For a stock solution of 2.5 mg/mL:
- 100 mg Tetracycline
- 40 mL 50% Ethanol
NOTE: Do not filter sterilize—the ethanol may dissolve the filter
NOTE: Store at 4°C
Triclosan (40 mL)
For a stock solution of 10 mg/mL:
NOTE: Do not filter sterilize—the ethanol may dissolve the filter
NOTE: Store at 4°C
Trimethoprim (40 mL)
For a stock solution of 6.25 mg/mL:
- 250 mg Trimethoprim
- 40 mL 100% DMSO
NOTE: Do not filter sterilize—the DMSO may dissolve the filter
NOTE: Store at 4°C
Antibiotics Table
| Antibiotic | Abbr. | Stripe | Stock | E. coli | S. meliloti | Solvent | Storage |
|---|---|---|---|---|---|---|---|
| Ampicillin | Ap | BLACK | 25 mg/mL | 100 μg/mL (250X) | N/A | ddH2O | 4°C |
| Chloramphenicol | Cm | BROWN | 7.5 mg/mL | 30 μg/mL (250X) | N/A | 50% EtOH | 4°C |
| Erythromycin | Er | | 10 mg/mL | N/A | N/A | 100% EtOH | –20°C |
| Gentamycin | Gm | PURPLE | 7.5 mg/mL | 3 μg/mL (2500X) | 15 μg/mL (500X) | ddH2O | 4°C |
| Hygromycin | Hy | | 5 mg/mL | 20 μg/mL (250X) | 20 μg/mL (250X) | ddH2O | 4°C |
| Kanamycin | Km | YELLOW | 7.5 mg/mL | 30 μg/mL (250X) | Use Neomycin | ddH2O | 4°C |
| Nalidixic acid | Na | | 30 mg/mL | 30 μg/mL (1000X) | N/A | ddH2O | 4°C |
| Neomycin | Nm | GREEN | 25 mg/mL | Use Kanamycin | 100 μg/mL (250X) | ddH2O | 4°C |
| Phosphomycin | Pm | | 25 mg/mL | N/A | 100 μg/mL (250X) | ddH2O | 4°C |
| Rifampicin | Rf | | 50 mg/mL | N/A | 100 μg/mL (500X) | DMF | –20°C |
| Spectinomycin | Sp | ORANGE | 20 mg/mL | 80 μg/mL (250X) | 80 μg/mL (250X) | ddH2O | 4°C |
| Streptomycin | Sm | BLUE | 50 mg/mL | N/A | 200 μg/mL (250X) | ddH2O | 4°C |
| Tetracycline | Tc | RED | 2.5 mg/mL | 5 μg/mL (500X) | 5 μg/mL (500X) | 50% EtOH | 4°C |
| Triclosan | Tr | | 10 mg/mL | N/A | N/A | 100% EtOH | 4°C |
| Trimethoprim | Tm | | 6.25 mg/mL | N/A | 12.5 μg/mL (500X) | 100% DMSO | 4°C |
Note: These parameters are intended to be compatible with pre-made 250-mL amounts of LB agar, such that usually 1 mL of stock solution is diluted into the LB agar. For liquid LB (typically 75 mL amounts) 0.3 mL of the stock solution will usually be added. Exceptions: Gentamycin, Nalidixic Acid, and Rifampicin.
DNA
10 mM dNTPs
- Thaw and mix (stir) 100 mM stock solutions of dGTP, dATP, dTTP, dCTP (NEB; in freezer)
- Master Mix:
- Dispense 100-μL aliquots into 1.7-mL tubes
Note: Store in the –20°C freezer in the box marked "Other Enzymes"
10X Taq buffer
- Label tubes: 10X Taq buffer
- Thaw and mix (stir) "Thermo pol buffer" (NEB; in freezer)
- Aliquot 375 μL of "Thermo pol buffer" into tubes—do not dilute!
Note: Store in the –20°C freezer in the box marked "Other Enzymes"
10X Pfx buffer
- Label tubes: 10X Pfx buffer
- Thaw and mix (stir) "Pfx50 10X PCR Buffer" (NEB; in freezer)
- Aliquot 375 μL of "Pfx50 10X PCR Buffer" into tubes—do not dilute!
Note: Store in the –20°C freezer in the box marked "Other Enzymes"
8X DNA loading
- 40% glycerol
- 1/50 dilution of 2% bromophenol blue
DNA ladder
- 140 μL ddH20
- 40 μL 8X DNA loading buffer
- 20 μL 1 kb ladder from NEB
- 2 μL 0.25 M EDTA
Note: use 5 μL per lane; 3kb band = 60 ng
Ethidium Bromide (1 mL)
- 100 μL 10 mg/mL ethidium bromide
- This is stored on the middle shelf of the refrigerator on the right
- 900 μL ddH2O
Note: use 8 μL per 50 mL gel
WARNING: Always wear gloves when handling ethidium bromide
Ethidium Bromide (10 mL)
- 10 mL ddH2O
- 10 mg ethidium bromide
Note: use 8 μL per 50 mL gel
WARNING: Always wear gloves when handling ethidium bromide
Media Additives
1 M Calcium Chloride (75 mL)
- 75 mL ddH2O
- 11.027 g calcium chloride dihydrate (CaCl2·2H2O)
Autoclave
2 M Magnesium Chloride (75 mL)
- 75 mL ddH2O
- 30.4965 g magnesium chloride hexahydrate (MgCl2·6H2O)
Autoclave
1 M Sodium Citrate (40 mL)
- 35 mL ddH2O
- 11.76 g sodium citrate tribasic dihydrate (Na3C6H5O7·2H2O)
- pH to 5.7 with HCl (~1 mL)
- QS to 40 mL with ddH2O
Sterile filter
2% X-gal
- 10 mL N,N-dimethylformamide (DMF)(in fume hood)
- 0.2 g 5-bromo-4-chloro-3-indolyl- beta-D-galactopyranoside (X-gal)(in freezer)
Store at –20°C
0.2 M IPTG
- 5 mL ddH2O
- 0.238g isopropyl-β-D-thiogalactopyranoside (IPTG)(in freezer)
Sterile filter, aliquot, and store at –20°C
1 M Copper (II) sulfate (50 mL)
- 50 mL ddH2O
- 7.98 g CuSO4
Sterile filter
10% SDS (75 mL)
- 75 mL ddH2O
- 7.5 g Sodium dodecyl sulfate (SDS)
Do not sterilize
20% SDS (75 mL)
- 75 mL ddH2O
- 15 g Sodium dodecyl sulfate (SDS)
Do not sterilize
30% Acrylamide (75 mL)
- 75 mL ddH2O
- 22.5 g acrylamide
40% Acrylamide (75 mL)
- 75 mL ddH2O
- 30 g acrylamide
10% Ammonium persulfate (75 mL)
- 75 mL ddH2O
- 7.5 g ammonium persulfate (APS)
5 M NaCl (75 mL)
- 75 mL ddH2O
- 21.92 g NaCl
Autoclave
80% Glycerol (75 mL)
- 15 mL ddH2O
- 60 mL glycerol
Microwave for 30-second intervals on high until dissolved
Autoclave
1 M DTT (5 mL)
- 5 mL ddH2O
- 771 mg Dithiothreitol (DTT; in fridge)
Aliquot 500 μL into Eppendorf tubes Store in –20°C
Orcinol spray
- 5 mL ddH2O
- 25 mL methanol (in fume hood)
- 10 mL sulfuric acid (H2SO4 (in fume hood—be careful!)
- 200 mg orcinol


