Gunawan:Publications: Difference between revisions

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==Peer reviewed Conference Proceedings==
==Peer reviewed Conference Proceedings==
Srinath S, Gunawan R. (2008)Identifiability Analysis of Metabolic Networks 11th International Conference on Molecular Systems Biology (ICMSB), Shanghai, China, June 21-25
*Perumal TM, Yan W, Gunawan R. '''(2008)''' Robustness Analysis of Cellular Systems for ''In Silico'' Drug Discovery, Proceedings of the 17th World Congress - The International Federation of Automatic Control (IFAC), Seoul, Korea, July 6-11, PP: 12607-12612.
*Perumal TM, Yan W, Gunawan R. '''(2008)''' Robustness Analysis of Cellular Systems for ''In Silico'' Drug Discovery, Proceedings of the 17th World Congress - The International Federation of Automatic Control (IFAC), Seoul, Korea, July 6-11, PP: 12607-12612.



Revision as of 20:18, 2 July 2009

Chemical and Biological Systems Engineering Laboratory

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Book Chapter

  • R. Gunawan, K. Gadkar, and F. J. Doyle III. Methods to identify cellular architecture and dynamics from experimental data. In Z. Szallasi, V. Periwal, and J. Stelling (Eds.), System Modeling in Cellular Biology, MIT Press, 2006.
  • J. Shoemaker, R. Gunawan, and F. J. Doyle III. Model-based Optimal Experimental Design in Biological Systems. In J. Varner (Eds.), Methods in Molecular Biology: Caspases, to be published by Humana Press, 2006. in preparation
  • S. Hildebrandt, N. Bagheri, R. Gunawan, H. Mirsky, J. Shoemaker, S. Taylor, and F. J. Doyle III. Systems Analysis of Biological Networks in Systems Biology, to be published by Academic Press, 2006.

Journal Articles

  1. Gunawan R and Doyle FJ 3rd. Phase sensitivity analysis of circadian rhythm entrainment. J Biol Rhythms. 2007 Apr;22(2):180-94. DOI:10.1177/0748730407299194 | PubMed ID:17440219 | HubMed [Paper1]
  2. Gunawan R and Doyle FJ 3rd. Isochron-based phase response analysis of circadian rhythms. Biophys J. 2006 Sep 15;91(6):2131-41. DOI:10.1529/biophysj.105.078006 | PubMed ID:16815910 | HubMed [Paper2]
  3. Gadkar KG, Gunawan R, and Doyle FJ 3rd. Iterative approach to model identification of biological networks. BMC Bioinformatics. 2005 Jun 20;6:155. DOI:10.1186/1471-2105-6-155 | PubMed ID:15967022 | HubMed [Paper3]
  4. Gunawan R, Cao Y, Petzold L, and Doyle FJ 3rd. Sensitivity analysis of discrete stochastic systems. Biophys J. 2005 Apr;88(4):2530-40. DOI:10.1529/biophysj.104.053405 | PubMed ID:15695639 | HubMed [Paper4]

All Medline abstracts: PubMed | HubMed

Peer reviewed Conference Proceedings

Srinath S, Gunawan R. (2008)Identifiability Analysis of Metabolic Networks 11th International Conference on Molecular Systems Biology (ICMSB), Shanghai, China, June 21-25

  • Perumal TM, Yan W, Gunawan R. (2008) Robustness Analysis of Cellular Systems for In Silico Drug Discovery, Proceedings of the 17th World Congress - The International Federation of Automatic Control (IFAC), Seoul, Korea, July 6-11, PP: 12607-12612.
  • Perumal TM, Yan W, Gunawan R. (2008) In Silico Dynamical Analysis of Cellular Systems: A Molecular Perturbation Approach, Poster presented in the 12th Annual International Conference on Research in Computational Molecular Biology (RECOMB), Singapore, March 30 - April 2.
  • Perumal TM, Yan W, Gunawan R. (2008) In Silico Molecular Analysis: Application to Fas-Induced Apoptotic Pathway, Poster presented in the 10th International Conference on Molecular Systems Biology (ICMSB), Manila, Philippines, February 25-28.
  • Perumal TM, Yan W, Gunawan R. (2007) In Silico Molecular Analysis: Application to the Fas-induced Apoptotic Pathway, Poster presented in the 8th International Conference on Systems Biology (ICSB), California, USA, October 1-6.