Gunawan:Publications

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(Peer reviewed Conference Proceedings)
(Peer reviewed Conference Proceedings)
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==Peer reviewed Conference Proceedings==
==Peer reviewed Conference Proceedings==
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*Suresh P, Gruber J, Halliwell B, and <u> Gunawan R. </u> '''(2010)''' Sarcopenia ''in silico'', In ''AiChe annual general meeting'', Salt Lake City, USA, Nov 7-12.
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*Suresh P, Gruber J, Halliwell B, <u> Gunawan R. </u> '''(2010)''' Elucidating Mechanisms of Age-dependent Accumulation of Mitochondrial DNA Deletions – An ''in silico'' Approach, In ''Gordon Research Conference on Biology of Aging'', Switzerland, Aug 22-27. (poster).
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*<u> Srinath S </u>, Gunawan R. '''(2010)''' Parameter Identifiability of Metabolic Network Models, In ''Satellite Conference of the  International Congress of Mathematics'', Hyderabad, India, Aug 16-18
*<u> Srinath S </u>, Gunawan R. '''(2010)''' Parameter Identifiability of Metabolic Network Models, In ''Satellite Conference of the  International Congress of Mathematics'', Hyderabad, India, Aug 16-18

Revision as of 22:27, 29 November 2010

Chemical and Biological Systems Engineering Laboratory

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Book Chapter

  • R. Gunawan, K. Gadkar, and F. J. Doyle III. Methods to identify cellular architecture and dynamics from experimental data. In Z. Szallasi, V. Periwal, and J. Stelling (Eds.), System Modeling in Cellular Biology, MIT Press, 2006.
  • J. Shoemaker, R. Gunawan, and F. J. Doyle III. Model-based Optimal Experimental Design in Biological Systems. In J. Varner (Eds.), Methods in Molecular Biology: Caspases, to be published by Humana Press, 2006. in preparation
  • S. Hildebrandt, N. Bagheri, R. Gunawan, H. Mirsky, J. Shoemaker, S. Taylor, and F. J. Doyle III. Systems Analysis of Biological Networks in Systems Biology, to be published by Academic Press, 2006.

Journal Articles

  1. Tam ZY, Cai YH, and Gunawan R. . pmid:21081062. PubMed HubMed [Paper1]
  2. Poovathingal SK and Gunawan R. . pmid:20691037. PubMed HubMed [Paper2]
  3. Srinath S and Gunawan R. . pmid:20197073. PubMed HubMed [Paper3]
  4. Poovathingal SK, Gruber J, Halliwell B, and Gunawan R. . pmid:19936024. PubMed HubMed [Paper4]
  5. Perumal TM, Wu Y, and Gunawan R. . pmid:19660478. PubMed HubMed [Paper5]
  6. Gunawan R and Doyle FJ 3rd. . pmid:17440219. PubMed HubMed [Paper6]
  7. Gunawan R and Doyle FJ 3rd. . pmid:16815910. PubMed HubMed [Paper7]
  8. Gadkar KG, Gunawan R, and Doyle FJ 3rd. . pmid:15967022. PubMed HubMed [Paper8]
  9. Gunawan R, Cao Y, Petzold L, and Doyle FJ 3rd. . pmid:15695639. PubMed HubMed [Paper9]
All Medline abstracts: PubMed HubMed

Peer reviewed Conference Proceedings

  • Suresh P, Gruber J, Halliwell B, and Gunawan R. (2010) Sarcopenia in silico, In AiChe annual general meeting, Salt Lake City, USA, Nov 7-12.
  • Suresh P, Gruber J, Halliwell B, Gunawan R. (2010) Elucidating Mechanisms of Age-dependent Accumulation of Mitochondrial DNA Deletions – An in silico Approach, In Gordon Research Conference on Biology of Aging, Switzerland, Aug 22-27. (poster).
  • Srinath S , Gunawan R. (2010) Parameter Identifiability of Metabolic Network Models, In Satellite Conference of the International Congress of Mathematics, Hyderabad, India, Aug 16-18
  • Perumal TM , Gunawan R. (2010) In analyzing the complex dynamics of biochemical pathways, In Satellite Conference of the International Congress of Mathematics, Hyderabad, India, Aug 16-18
  • Srinath S , Yuan Z, Gunawan R. (2010) Identifiability Analysis of Decoupled Power-Law Models, In 5th International Symposium on Design, Operation and Control of Chemical Processes (PSE Asia), Singapore, July 25-28
  • Gengjie J , Gunawan R. (2010) Parameter Estimation of Kinetic Models from Incomplete Metabolic Profiles, In 5th International Symposium on Design, Operation and Control of Chemical Processes (PSE Asia), Singapore, July 25-28
  • Srinath S , Gunawan R. (2010) Parameter Identifiability in Kinetic Modeling of Metabolic Pathways, In Metabolic Engineering Conference VIII, Jeju Island, South Korea, Jun 13 - 17 (poster)
  • Perumal TM , Gunawan R. (2009) Information transfer in Biological Network Motifs, In 10th International Conference on Systems Biology (ICSB), Stanford, California, USA, Aug 30 - Sep 4 (poster)
  • Suresh P , Gruber J, Halliwell B, Gunawan R. (2009) Stochasticity in mitochondrial DNA point mutation and its relevance in Caenorhabditis elegans Aging, In 10th International Conference on Systems Biology (ICSB), Stanford, California, USA, Aug 30 - Sep 4 (poster)
  • Perumal TM , Gunawan R. (2009) Information-theoretic global robustness analysis of cellular systems: A molecular perturbation approach, In Third International Conference on Foundations of Systems Biology in Engineering (FOSBE), Denver, Colorado, USA, August 9 - 12, PP: 52 - 55 (poster)
  • Suresh P , Gruber J, Halliwell B, Gunawan R. (2009) A global approach for estimating the kinetic parameters of stochastic biological systems, In Third International Conference on Foundations of Systems Biology in Engineering (FOSBE), Denver, Colorado, USA, August 9 - 12, PP: 56 - 59 (poster)
  • Srinath S, Gunawan R . (2009) Identifiability Analysis of Metabolic Networks, In 11th International Conference on Molecular Systems Biology (ICMSB), Shanghai, China, June 21-25
  • Suresh P, Gruber J, Halliwell B, Gunawan R . (2008) Aging Studies: A Stochastic Approach in point mutation dynamics in mouse model In AiChe annual general meeting , Philadelphia, USA, Nov 16-21
  • Perumal TM, Yan W, Gunawan R . (2008) Robustness Analysis of Cellular Systems for In Silico Drug Discovery, In 17th World Congress - The International Federation of Automatic Control (IFAC), Seoul, Korea, July 6-11, PP: 12607-12612
  • Perumal TM , Yan W, Gunawan R. (2008) In Silico Dynamical Analysis of Cellular Systems: A Molecular Perturbation Approach, In 12th Annual International Conference on Research in Computational Molecular Biology (RECOMB), Singapore, March 30 - April 2 (poster)
  • Suresh P , Gruber J, Halliwell B, Gunawan R. (2008) Aging Studies: A Stochastic Approach, In 12th Annual International Conference on Research in Computational Molecular Biology (RECOMB), Singapore, March 30 - April 2 (poster)
  • Perumal TM, Yan W, Gunawan R . (2008) In Silico Molecular Analysis: Application to Fas-Induced Apoptotic Pathway, In 10th International Conference on Molecular Systems Biology (ICMSB), Manila, Philippines, February 25-28 (poster)
  • Perumal TM, Yan W, Gunawan R . (2007) In Silico Molecular Analysis: Application to the Fas-induced Apoptotic Pathway, In 8th International Conference on Systems Biology (ICSB), California, USA, October 1-6 (poster)
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