Harmer Lab:Publications

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<h3><font style="color:#4B0082;">Publications</font></h3>
<h3><font style="color:#4B0082;">Publications</font></h3>
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<biblio>
 
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#Hamer-2010 pmid=20921165
+
*Harmer, S.L. (2010).  Plant biology in the fourth dimension.  Plant Physiology, 154:467 - 470. [http://www.plantphysiol.org/cgi/content/full/154/2/467]
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#Rawat-2009 pmid=19805390  
+
 
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#Harmer-2009 pmid=19575587
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*Rawat, R., Schwartz, J., Jones, M.A., Sairanen, I., Cheng, Y., Andersson, C.R., Zhao, Y., Ljung, K., and Harmer, S.L. (2009). REVEILLE1, a Myb-like transcription factor, integrates the circadian clock and auxin pathways. Proceedings of the National Academy of the Sciences 106(39) 16883-16888. [http://www.pnas.org/content/106/39/16883.long]
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#Covington-2008 pmid=18710561
+
 
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#Martin-Tryon-2008 pmid=18515502
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*Harmer, S.L. (2009).  The circadian system in higher plants.  Annual Review of Plant Biology 60: 357 – 77. [http://www.annualreviews.org/doi/full/10.1146/annurev.arplant.043008.092054?url_ver=Z39.88-2003&rfr_id=ori:rid:crossref.org&rfr_dat=cr_pub%3dpubmed]
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#Gong-2008 pmid=19802365
+
 
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#Covington-2007 pmid=17683202
+
*Covington, M.F., Maloof, J.N., Straume, M., Kay, S.A., and Harmer, S.L. (2008).  Global transcriptome analysis reveals circadian regulation of key pathways in plant growth and development.  Genome Biology, 9(8):R130. [http://genomebiology.com/content/9/8/R130]
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#Martin-Tryon-2007 pmid=17098855
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#Walley-2007 pmid=17953483
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*Martin-Tryon, E.L., and Harmer, S.L. (2008). XAP5 CIRCADIAN TIMEKEEPER coordinates light signals for proper timing of photomorphogenesis and the circadian clock in Arabidopsis. Plant Cell 20(5):1244-59. [http://www.plantcell.org/cgi/content/full/20/5/1244]
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#Nozue-2007 pmid=17589502
+
 
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#Oliverio-2007 pmid=17384162
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*Gong, W., He, K., Covington, M.F., Dinesh-Kumar, S.P., Snyder, M., Harmer, S.L., Zhu, X., and Deng, X.P. (2008). The development of protein microarrays and their applications in DNA-protein and protein-protein interaction analyses of Arabidopsis transcription factors. Molecular Plant, 1(1): 27 – 41. [http://mplant.oxfordjournals.org/content/1/1/27.long]
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#Harmer-2005 pmid=15923346
+
 
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#Farre-2005 pmid=15649364
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*Covington, M.F. and Harmer, S.L (2007) The circadian clock regulates auxin signaling and responses in Arabidopsis.  PLoS Biology, 5(8): e227 [http://www.plosbiology.org/article/info%3Adoi%2F10.1371%2Fjournal.pbio.0050222]
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#Alabadi-2002 pmid=12007421
+
 
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#Harmer-2000 pmid=11118138
+
*Nozue, K., Covington, M.F.,  Duek, P.D., Lorrain, S., Fankhauser, C., Harmer, S.L., and Maloof, J.N. (2007) Rhythmic growth explained by coincidence between internal and external cues.  Nature, 448:358-61. [http://www.nature.com/nature/journal/v448/n7151/full/nature05946.html]
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</biblio>
+
 
 +
*Walley, J.W., Coughlan, S., Hudson, M.E., Covington, M.F., Kaspi, R., Banu, G., Harmer, S.L., and Dehesh, K. (2007) Mechanical stress induces biotic and abiotic stress responses via a novel cis-element. PLoS Genetics, 3(10): e172. [http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.0030172]
 +
 
 +
*Oliverio, K.A., Crepy, M.,  Martin-Tryon, E.L., Milich, R., Harmer, S.L., Putterill, J., Yanovsky, M., Casal, J.J. (2007) GIGANTEA regulates phytochrome A-mediated photomorphogenesis independently of its role in the circadian clock. Plant Physiology 144:495-502 [http://www.plantphysiol.org/cgi/content/full/144/1/495]
 +
 
 +
*Martin-Tryon, E.L., Kreps, J.A., Harmer, S.L. (2007).  GIGANTEA acts in blue light signaling and has biochemically separable roles in circadian clock and flowering time regulation.  Plant Physiology 143:473-486. [http://www.plantphysiol.org/cgi/content/full/143/1/473]
 +
 
 +
*Harmer, S. L. and Kay, S. A. (2005). Positive and negative factors confer phase-specific circadian regulation of transcription in Arabidopsis.  Plant Cell 17:1926-1940. [http://www.plantcell.org/cgi/content/full/17/7/1926]
 +
 
 +
*Farre, E. M., Harmer, S. L., Harmon, F. G., Yanovsky, M. J., and Kay, S. A. (2005). Overlapping and distinct roles of PRR7 and PRR9 in the Arabidopsis circadian clock.  Current Biology 15:47-54. [http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6VRT-4F7HFVD-V&_user=4421&_coverDate=01%2F11%2F2005&_rdoc=1&_fmt=high&_orig=search&_origin=search&_sort=d&_docanchor=&view=c&_acct=C000059598&_version=1&_urlVersion=0&_userid=4421&md5=41d4ab00c0f50a7b114d31d542fd77f3&searchtype=a]
 +
 
 +
*Alabadi, D., Mas, P., Yanovsky, M., Harmer, S. L., and Kay, S. A. (2002). Critical role for CCA1 and LHY in maintaining circadian rhythmicity in Arabidopsis. Current Biology 12:757-761. [http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6VRT-45X0D1F-T&_user=4421&_coverDate=04%2F30%2F2002&_rdoc=1&_fmt=high&_orig=search&_origin=search&_sort=d&_docanchor=&view=c&_acct=C000059598&_version=1&_urlVersion=0&_userid=4421&md5=b9d73831ee3b71339f8545e57ed92549&searchtype=a]
 +
 
 +
*Harmer, S. L., Panda, S., and Kay, S. A. (2001). Molecular bases of circadian rhythms.  Annual Review of Cell and Developmental Biology 17:215-253. [http://www.annualreviews.org/doi/full/10.1146/annurev.cellbio.17.1.215?url_ver=Z39.88-2003&rfr_id=ori:rid:crossref.org&rfr_dat=cr_pub%3dpubmed]
 +
 
 +
*Harmer, S. L., Hogenesch, J. B., Straume, M., Chang, H. S., Han, B., Zhu, T., Wang, X., Kreps, J. A., and Kay, S. A. (2000). Orchestrated transcription of key pathways in Arabidopsis by the circadian clock.  Science 290:2110-2113. [http://www.sciencemag.org/content/290/5499/2110.long]

Revision as of 22:31, 16 November 2010

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Room 2123
Department of Plant Biology
1002 Life Sciences, One Shields Ave.
University of California Davis
Davis, CA 95616

Contact: slharmer at ucdavis.edu

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Publications

  • Harmer, S.L. (2010). Plant biology in the fourth dimension. Plant Physiology, 154:467 - 470. [1]
  • Rawat, R., Schwartz, J., Jones, M.A., Sairanen, I., Cheng, Y., Andersson, C.R., Zhao, Y., Ljung, K., and Harmer, S.L. (2009). REVEILLE1, a Myb-like transcription factor, integrates the circadian clock and auxin pathways. Proceedings of the National Academy of the Sciences 106(39) 16883-16888. [2]
  • Harmer, S.L. (2009). The circadian system in higher plants. Annual Review of Plant Biology 60: 357 – 77. [3]
  • Covington, M.F., Maloof, J.N., Straume, M., Kay, S.A., and Harmer, S.L. (2008). Global transcriptome analysis reveals circadian regulation of key pathways in plant growth and development. Genome Biology, 9(8):R130. [4]
  • Martin-Tryon, E.L., and Harmer, S.L. (2008). XAP5 CIRCADIAN TIMEKEEPER coordinates light signals for proper timing of photomorphogenesis and the circadian clock in Arabidopsis. Plant Cell 20(5):1244-59. [5]
  • Gong, W., He, K., Covington, M.F., Dinesh-Kumar, S.P., Snyder, M., Harmer, S.L., Zhu, X., and Deng, X.P. (2008). The development of protein microarrays and their applications in DNA-protein and protein-protein interaction analyses of Arabidopsis transcription factors. Molecular Plant, 1(1): 27 – 41. [6]
  • Covington, M.F. and Harmer, S.L (2007) The circadian clock regulates auxin signaling and responses in Arabidopsis. PLoS Biology, 5(8): e227 [7]
  • Nozue, K., Covington, M.F., Duek, P.D., Lorrain, S., Fankhauser, C., Harmer, S.L., and Maloof, J.N. (2007) Rhythmic growth explained by coincidence between internal and external cues. Nature, 448:358-61. [8]
  • Walley, J.W., Coughlan, S., Hudson, M.E., Covington, M.F., Kaspi, R., Banu, G., Harmer, S.L., and Dehesh, K. (2007) Mechanical stress induces biotic and abiotic stress responses via a novel cis-element. PLoS Genetics, 3(10): e172. [9]
  • Oliverio, K.A., Crepy, M., Martin-Tryon, E.L., Milich, R., Harmer, S.L., Putterill, J., Yanovsky, M., Casal, J.J. (2007) GIGANTEA regulates phytochrome A-mediated photomorphogenesis independently of its role in the circadian clock. Plant Physiology 144:495-502 [10]
  • Martin-Tryon, E.L., Kreps, J.A., Harmer, S.L. (2007). GIGANTEA acts in blue light signaling and has biochemically separable roles in circadian clock and flowering time regulation. Plant Physiology 143:473-486. [11]
  • Harmer, S. L. and Kay, S. A. (2005). Positive and negative factors confer phase-specific circadian regulation of transcription in Arabidopsis. Plant Cell 17:1926-1940. [12]
  • Farre, E. M., Harmer, S. L., Harmon, F. G., Yanovsky, M. J., and Kay, S. A. (2005). Overlapping and distinct roles of PRR7 and PRR9 in the Arabidopsis circadian clock. Current Biology 15:47-54. [13]
  • Alabadi, D., Mas, P., Yanovsky, M., Harmer, S. L., and Kay, S. A. (2002). Critical role for CCA1 and LHY in maintaining circadian rhythmicity in Arabidopsis. Current Biology 12:757-761. [14]
  • Harmer, S. L., Panda, S., and Kay, S. A. (2001). Molecular bases of circadian rhythms. Annual Review of Cell and Developmental Biology 17:215-253. [15]
  • Harmer, S. L., Hogenesch, J. B., Straume, M., Chang, H. S., Han, B., Zhu, T., Wang, X., Kreps, J. A., and Kay, S. A. (2000). Orchestrated transcription of key pathways in Arabidopsis by the circadian clock. Science 290:2110-2113. [16]
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