Harvard:Biophysics 101/2007/02/13: Difference between revisions
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==New assignment== | ==New assignment== | ||
*You will develop a script that can compare one or more input sequences to a reference sequence and report any interesting difference between the two. | *You will develop a script that can compare one or more input sequences to a reference sequence and report any interesting difference between the two. | ||
**It will be up to you (collectively) to come up with what is "interesting". Post your ideas to the discussion tab for this page. | **It will be up to you (collectively) to come up with what is "interesting". Post your ideas to the discussion tab for this page. | ||
Revision as of 12:13, 15 February 2007
New assignment
- You will develop a script that can compare one or more input sequences to a reference sequence and report any interesting difference between the two.
- It will be up to you (collectively) to come up with what is "interesting". Post your ideas to the discussion tab for this page.
- Use ApoE as your reference gene for this exercise.
- Check the BioPython documentation for dealing with alignments
- Rather than connecting to GenBank and downloading your reference sequence each time, try using some file I/O to save a local copy of sequence data that you need to reuse.
