Harvard:Biophysics 101/2007/03/15: Difference between revisions
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(New page: ==Assignment Due Mar 20== ===Exonic mutation finder=== Below is a exonic sequence of a gene. Which gene is it? Is it mutated? Is the allele implicated in disease? Which diseases? >Exam...) |
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Revision as of 09:07, 14 March 2007
Assignment Due Mar 20
Exonic mutation finder
Below is a exonic sequence of a gene. Which gene is it? Is it mutated? Is the allele implicated in disease? Which diseases?
>Example_a_exon
1 cttagcggta gccccttggt ttccgtggca acggaaaagc gcgggaatta cagataaatt 61 aaaactgcga ctgcgcggcg tgagctcgct gagacttcct ggacggggga caggctgtgg 121 ggtttctcag ataactgggc ccctgcgctc aggaggcctt caccctctgc tctgggtaaa 181 gttcattgga acagaaagaa atggatttat ctgctcttcg cgttgaagaa gtacaaaatg 241 tcattaatgc tatgcagaaa atcttagagt gtcccatctg tctggagttg atcaaggaac 301 ctgtctccac aaagtgtgac cacatatttt gcaaattttg catgctgaaa cttctcaacc 361 agaagaaagg gccttcacag tgtcctttat gtaagaatga tataaccaaa aggagcctac 421 aagaaagtac gagatttagt caacttgttg aagagctatt gaaaatcatt tgtgcttttc 481 agcttgacac aggtttggag tatgcaaaca gctataattt tgcaaaaaag gaaaataact 541 ctcctgaaca tctaaaagat gaagtttcta tcatccaaag tatgggctac agaaaccgtg 601 ccaaaagact tctacagagt gaacccgaaa atccttcctt gcaggaaacc agtctcagtg 661 tccaactctc taaccttgga actgtgagaa ctctgaggac aaagcagcgg atacaacctc 721 aaaagacgtc tgtctacatt gaattgggat ctgattcttc tgaagatacc gttaataagg 781 caacttattg cagtgtggga gatcaagaat tgttacaaat cacccctcaa ggaaccaggg 841 atgaaatcag tttggattct gcaaaaaagg ctgcttgtga attttctgag acggatgtaa 901 caaatactga acatcatcaa cccagtaata atgatttgaa caccactgag aagcgtgcag 961 ctgagaggca tccagaaaag tatcagggta gttctgtttc aaacttgcat gtggagccat 1021 gtggcacaaa tactcatgcc agctcattac agcatgagaa cagcagttta ttactcacta 1081 aagacagaat gaatgtagaa aaggctgaat tctgtaataa aagcaaacag cctggcttag 1141 caaggagcca acataacaga tgggctggaa gtaaggaaac atgtaatgat aggcggactc 1201 ccagcacaga aaaaaaggta gatctgaatg ctgatcccct gtgtgagaga aaagaatgga 1261 ataagcagaa actgccatgc tcagagaatc ctagagatac tgaagatgtt ccttggataa 1321 cactaaatag cagcattcag aaagttaatg agtggttttc cagaagtgat gaactgttag 1381 gttctgatga ctcacatgat ggggagtctg aatcaaatgc caaagtagct gatgtattgg 1441 acgttctaaa tgaggtagat gaatattctg gttcttcaga gaaaatagac ttactggcca 1501 gtgatcctca tgaggcttta atatgtaaaa gtgaaagagt tcactccaaa tcagtagaga 1561 gtaatattga agacaaaata tttgggaaaa cctatcggaa gaaggcaagc ctccccaact 1621 taagccatgt aactgaaaat ctaattatag gagcatttgt tactgagcca cagataatac 1681 aagagcgtcc cctcacaaat aaattaaagc gtaaaaggag acctacatca ggccttcatc 1741 ctgaggattt tatcaagaaa gcagatttgg cagttcaaaa gactcctgaa atgataaatc 1801 agggaactaa ccaaacggag cagaatggtc aagtgatgaa tattactaat agtggtcatg 1861 agaataaaac aaaaggtgat tctattcaga atgagaaaaa tcctaaccca atagaatcac 1921 tagaaaaaga atctgctttc aaaacgaaag ctgaacctat aagcagcagt ataagcaata 1981 tggaactcga attaaatatc cacaattcaa aagcacctaa aaagaatagg ctgaggagga 2041 agtcttctac caggcatatt catgcgcttg aactagtagt cagtagaaat ctaagcccac 2101 ctaattgtac tgaattgcaa attgatagtt gttctagcag tgaagagata aagaaaaaaa 2161 agtacaacca aatgccagtc aggcacagca gaaacctaca actcatggaa ggtaaagaac 2221 ctgcaactgg agccaagaag agtaacaagc caaatgaaca gacaagtaaa agacatgaca 2281 gcgatacttt cccagagctg aagttaacaa atgcacctgg ttcttttact aagtgttcaa 2341 ataccagtga acttaaagaa tttgtcaatc ctagccttcc aagagaagaa aaagaagaga 2401 aactagaaac agttaaagtg tctaataatg ctgaagaccc caaagatctc atgttaagtg 2461 gagaaagggt tttgcaaact gaaagatctg tagagagtag cagtatttca ttggtacctg 2521 gtactgatta tggcactcag gaaagtatct cgttactgga agttagcact ctagggaagg 2581 caaaaacaga accaaataaa tgtgtgagtc agtgtgcagc atttgaaaac cccaagggac 2641 taattcatgg ttgttccaaa gataatagaa atgacacaga aggctttaag tatccattgg 2701 gacatgaagt taaccacagt cgggaaacaa gcatagaaat ggaagaaagt gaacttgatg 2761 ctcagtattt gcagaataca ttcaaggttt caaagcgcca gtcatttgct ccgttttcaa 2821 atccaggaaa tgcagaagag gaatgtgcaa cattctctgc ccactctggg tccttaaaga 2881 aacaaagtcc aaaagtcact tttgaatgtg aacaaaagga agaaaatcaa ggaaagaatg 2941 agtctaatat caagcctgta cagacagtta atatcactgc aggctttcct gtggttggtc 3001 agaaagataa gccagttgat aatgccaaat gtagtatcaa aggaggctct aggttttgtc 3061 tatcatctca gttcagaggc aacgaaactg gactcattac tccaaataaa catggacttt 3121 tacaaaaccc atatcgtata ccaccacttt ttcccatcaa gtcatttgtt aaaactaaat 3181 gtaagaaaaa tctgctagag gaaaactttg aggaacattc aatgtcacct gaaagagaaa 3241 tgggaaatga gaacattcca agtacagtga gcacaattag ccgtaataac attagagaaa 3301 atgtttttaa agaagccagc tcaagcaata ttaatgaagt aggttccagt actaatgaag 3361 tgggctccag tattaatgaa ataggttcca gtgatgaaaa cattcaagca gaactaggta 3421 gaaacagagg gccaaaattg aatgctatgc ttagattagg ggttttgcaa cctgaggtct 3481 ataaacaaag tcttcctgga agtaattgta agcatcctga aataaaaaag caagaatatg 3541 aagaagtagt tcagactgtt aatacagatt tctctccata tctgatttca gataacttag 3601 aacagcctat gggaagtagt catgcatctc aggtttgttc tgagacacct gatgacctgt 3661 tagatgatgg tgaaataaag gaagatacta gttttgctga aaatgacatt aaggaaagtt 3721 ctgctgtttt tagcaaaagc gtccagaaag gagagcttag caggagtcct agccctttca 3781 cccatacaca tttggctcag ggttaccgaa gaggggccaa gaaattagag tcctcagaag 3841 agaacttatc tagtgaggat gaagagcttc cctgcttcca acacttgtta tttggtaaag 3901 taaacaatat accttctcag tctactaggc atagcaccgt tgctaccgag tgtctgtcta 3961 agaacacaga ggagaattta ttatcattga agaatagctt aaatgactgc agtaaccagg 4021 taatattggc aaaggcatct caggaacatc accttagtga ggaaacaaaa tgttctgcta 4081 gcttgttttc ttcacagtgc agtgaattgg aagacttgac tgcaaataca aacacccagg 4141 atcctttctt gattggttct tccaaacaaa tgaggcatca gtctgaaagc cagggagttg 4201 gtctgagtga caaggaattg gtttcagatg atgaagaaag aggaacgggc ttggaagaaa 4261 ataatcaaga agagcaaagc atggattcaa acttaggtga agcagcatct gggtgtgaga 4321 gtgaaacaag cgtctctgaa gactgctcag ggctatcctc tcagagtgac attttaacca 4381 ctcagcagag ggataccatg caacataacc tgataaagct ccagcaggaa atggctgaac 4441 tagaagctgt gttagaacag catgggagcc agccttctaa cagctaccct tccatcataa 4501 gtgactcttc tgcccttgag gacctgcgaa atccagaaca aagcacatca gaaaaagcag 4561 tattaacttc acagaaaagt agtgaatacc ctataagcca gaatccagaa ggcctttctg 4621 ctgacaagtt tgaggtgtct gcagatagtt ctaccagtaa aaataaagaa ccaggagtgg 4681 aaaggtcatc cccttctaaa tgcccatcat tagatgatag gtggtacatg cacagttgct 4741 ctgggagtct tcagaataga aactacccat ctcaagagga gctcattaag gttgttgatg 4801 tggaggagca acagctggaa gagtctgggc cacacgattt gacggaaaca tcttacttgc 4861 caaggcaaga tctagaggga accccttacc tggaatctgg aatcagcctc ttctctgatg 4921 accctgaatc tgatccttct gaagacagag ccccagagtc agctcgtgtt ggcaacatac 4981 catcttcaac ctctgcattg aaagttcccc aattgaaagt tgcagaatct gcccagagtc 5041 cagctgctgc tcatactact gatactgctg ggtataatgc aatggaagaa agtgtgagca 5101 gggagaagcc agaattgaca gcttcaacag aaagggtcaa caaaagaatg tccatggtgg 5161 tgtctggcct gaccccagaa gaatttatgc tcgtgtacaa gtttgccaga aaacaccaca 5221 tcactttaac taatctaatt actgaagaga ctactcatgt tgttatgaaa acagatgctg 5281 agtttgtgtg tgaacggaca ctgaaatatt ttctaggaat tgcgggagga aaatgggtag 5341 ttagctattt ctgggtgacc cagtctatta aagaaagaaa aatgctgaat gagcatgatt 5401 ttgaagtcag aggagatgtg gtcaatggaa gaaaccacca aggtccaaag cgagcaagag 5461 aatcccagga cagaaagatc ttcagggggc tagaaatctg ttgctatggg cccttcacca 5521 acatgcccac agatcaactg gaatggatgg tacagctgtg tggtgcttct gtggtgaagg 5581 agctttcatc attcaccctt ggcacaggtg tccacccaat tgtggttgtg cagccagatg 5641 cctggacaga ggacaatggc ttccatgcaa ttgggcagat gtgtgaggca cctgtggtga 5701 cccgagagtg ggtgttggac agtgtagcac tctaccagtg ccaggagctg gacacctacc 5761 tgatacccca gatcccccac agccactact gactgcagcc agccacaggt acagagccac 5821 aggaccccaa gaatgagctt acaaagtggc ctttccaggc cctgggagct cctctcactc 5881 ttcagtcctt ctactgtcct ggctactaaa tattttatgt acatcagcct gaaaaggact 5941 tctggctatg caagggtccc ttaaagattt tctgcttgaa gtctcccttg gaaatctgcc 6001 atgagcacaa aattatggta atttttcacc tgagaagatt ttaaaaccat ttaaacgcca 6061 ccaattgagc aagatgctga ttcattattt atcagcccta ttctttctat tcaggctgtt 6121 gttggcttag ggctggaagc acagagtggc ttggcctcaa gagaatagct ggtttcccta 6181 agtttacttc tctaaaaccc tgtgttcaca aaggcagaga gtcagaccct tcaatggaag 6241 gagagtgctt gggatcgatt atgtgactta aagtcagaat agtccttggg cagttctcaa 6301 atgttggagt ggaacattgg ggaggaaatt ctgaggcagg tattagaaat gaaaaggaaa 6361 cttgaaacct gggcatggtg gctcacgcct gtaatcccag cactttggga ggccaaggtg 6421 ggcagatcac tggaggtcag gagttcgaaa ccagcctggc caacatggtg aaaccccatc 6481 tctactaaaa atacagaaat tagccggtca tggtggtgga cacctgtaat cccagctact 6541 caggtggcta aggcaggaga atcacttcag cccgggaggt ggaggttgca gtgagccaag 6601 atcataccac ggcactccag cctgggtgac agtgagactg tggctcaaaa aaaaaaaaaa 6661 aaaaaggaaa atgaaactag aagagatttc taaaagtctg agatatattt gctagatttc 6721 taaagaatgt gttctaaaac agcagaagat tttcaagaac cggtttccaa agacagtctt 6781 ctaattcctc attagtaata agtaaaatgt ttattgttgt agctctggta tataatccat 6841 tcctcttaaa atataagacc tctggcatga atatttcata tctataaaat gacagatccc 6901 accaggaagg aagctgttgc tttctttgag gtgatttttt tcctttgctc cctgttgctg 6961 aaaccataca gcttcataaa taattttgct tgctgaagga agaaaaagtg tttttcataa 7021 acccattatc caggactgtt tatagctgtt ggaaggacta ggtcttccct agccccccca 7081 gtgtgcaagg gcagtgaaga cttgattgta caaaatacgt tttgtaaatg ttgtgctgtt 7141 aacactgcaa ataaacttgg tagcaaacac ttcaaaaaaa aaaaaaaaaa a
- Write a script to automatically carry out the interpretation you performed manually.