Harvard:Biophysics 101/2007/04/10: Difference between revisions
From OpenWetWare
Jump to navigationJump to search
| Line 33: | Line 33: | ||
**Known alleles | **Known alleles | ||
**Penetrance | **Penetrance | ||
***WIKI brainstorm | ***WIKI brainstorm - HapMap?? | ||
*Web interface | *Web interface | ||
**Not just script also paste in sequence | **Not just script also paste in sequence | ||
Revision as of 08:30, 10 April 2007
What we have now
- Sequence
- RS#
- OMIM
- Parsed OMIM output
- Pubmed - reviews and related articles
- News (sort good from bad)
- Wikipedia
What we need
Please sign up for problems below
- Prioritize RS# - How to quantify the criteria below?
- Disease relevance
- Number of PMID's
- Number of drugs for particular disease
- Disease lists from WHO - cross ref with pubmed
- CDC
- California excel table - frequency of diagnosis
- Frequency of deleterious allele
- Clustering alleles with respect to genes and particular diseases
- Treatment
- Emedicine
- Known drugs, devices, patents, total dolars spent
- WHO
- Curable
- Treatable
- Preventable
- Known alleles
- Penetrance
- WIKI brainstorm - HapMap??
- Disease relevance
- Web interface
- Not just script also paste in sequence
- Maybe useful source for getting sequence data
- Non OMIM based analysis of sequences
Resources for disease frequency
- CDC Database of morbidity: http://www.cdc.gov/nchs/icd9.htm , in text files which can be parsed
- Diagnosis Frequency data from state of California: http://www.oshpd.ca.gov/hqad/PatientLevel/ICD9_Codes/index.htm
- CDC information for causes of death (in pdf) http://www.cdc.gov/nchs/fastats/lcod.htm
--Zsun
