Harvard:Biophysics 101/2007/04/10: Difference between revisions
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What we have now | ==What we have now== | ||
*Sequence | *Sequence | ||
| Line 9: | Line 9: | ||
**Wikipedia | **Wikipedia | ||
What we need: | ==What we need== | ||
*I added the names of those who signed up in class -[[User:Cchi|Cchi]] 19:00, 11 April 2007 (EDT) | |||
<pre> | |||
Please sign up for problems below | |||
</pre> | |||
*Prioritize RS# - How to quantify the criteria below? | *Prioritize RS# - How to quantify the criteria below? | ||
**Disease relevance | **Disease relevance | ||
**Frequency | ***Number of PMID's | ||
**Treatment | ***Number of drugs for particular disease | ||
***Disease lists from WHO - cross ref with pubmed | |||
***CDC | |||
***Keywords in disease classification | |||
****Mesh terms - Deniz | |||
****Keywords from OMIM - Resmi | |||
***California excel table - frequency of diagnosis - Zach | |||
***Clustering algorithm (on the side) - Kay | |||
**Frequency of deleterious allele | |||
***[http://www.genecards.org/index.shtml GeneCards] | |||
***Clustering alleles with respect to genes and particular diseases | |||
**Treatment | |||
***[http://www.emedicine.com/ Emedicine] - Tiff | |||
***Known drugs, devices, patents, total dolars spent | |||
***WHO - Hetmann and Cynthia | |||
****Curable | |||
****Treatable | |||
****Preventable | |||
**Known alleles | **Known alleles | ||
**Penetrance | **Penetrance | ||
***WIKI brainstorm - HapMap?? OMIM? | |||
*Web interface | *Web interface | ||
**Not just script also paste in sequence | **Not just script also paste in sequence - Xiaodi | ||
**Maybe useful source for getting sequence data | **Maybe useful source for getting sequence data | ||
*Non OMIM based analysis of sequences - Chris | |||
**SNPdb? | |||
*Presentation of Information | |||
**Review articles | |||
***use PMID's for related review articles - Resmi | |||
***Beyond PubMed: Google scholar | |||
**News | |||
***Beyond Google News, restricting to certain sites | |||
**Social Network? | |||
Latest revision as of 13:30, 14 April 2007
What we have now
- Sequence
- RS#
- OMIM
- Parsed OMIM output
- Pubmed - reviews and related articles
- News (sort good from bad)
- Wikipedia
What we need
- I added the names of those who signed up in class -Cchi 19:00, 11 April 2007 (EDT)
Please sign up for problems below
- Prioritize RS# - How to quantify the criteria below?
- Disease relevance
- Number of PMID's
- Number of drugs for particular disease
- Disease lists from WHO - cross ref with pubmed
- CDC
- Keywords in disease classification
- Mesh terms - Deniz
- Keywords from OMIM - Resmi
- California excel table - frequency of diagnosis - Zach
- Clustering algorithm (on the side) - Kay
- Frequency of deleterious allele
- GeneCards
- Clustering alleles with respect to genes and particular diseases
- Treatment
- Emedicine - Tiff
- Known drugs, devices, patents, total dolars spent
- WHO - Hetmann and Cynthia
- Curable
- Treatable
- Preventable
- Known alleles
- Penetrance
- WIKI brainstorm - HapMap?? OMIM?
- Disease relevance
- Web interface
- Not just script also paste in sequence - Xiaodi
- Maybe useful source for getting sequence data
- Non OMIM based analysis of sequences - Chris
- SNPdb?
- Presentation of Information
- Review articles
- use PMID's for related review articles - Resmi
- Beyond PubMed: Google scholar
- News
- Beyond Google News, restricting to certain sites
- Social Network?
- Review articles
