Harvard:Biophysics 101/2007/04/19 - Revision history

Zsun at 05:57, 26 April 2007

Zsun — Thu, 26 Apr 2007 05:57:38 GMT

←Older revision		Revision as of 05:57, 26 April 2007
Line 6:		Line 6:
	'''Plans'''		'''Plans'''
	* [[Harvard:Biophysics_101/2007/Notebook:Christopher_Nabel/2007-4-19\|Chris]] Write SNP sequence parser and integrate QC code. Propose ideas for OMIM non-hits.		* [[Harvard:Biophysics_101/2007/Notebook:Christopher_Nabel/2007-4-19\|Chris]] Write SNP sequence parser and integrate QC code. Propose ideas for OMIM non-hits.
-	* Zach Finish CDC prevalence [[Harvard:Biophysics_101/Notebook:ZS/2007-4-22\| 4-24 completion]], consolidate CDS mutation code from earlier (delayed) / determine CDS from a gene input or blast search [[Harvard:Biophysics_101/Notebook:ZS/2007-4-26 \| 4-26 almost complete]]	+	* Zach Finish CDC prevalence [[Harvard:Biophysics_101/Notebook:ZS/2007-4-22\| 4-24 completion]] / consolidate CDS mutation code from earlier (delayed) / determine CDS from a gene input or blast search [[Harvard:Biophysics_101/Notebook:ZS/2007-4-26 \| 4-26 almost complete]]
	* [[TChan/Notebook/2007-4-22 \|Tiff]] Learn how to & parse HTML and XML to extract info from MedStory searches		* [[TChan/Notebook/2007-4-22 \|Tiff]] Learn how to & parse HTML and XML to extract info from MedStory searches
	* [[Harvard:Biophysics_101/2007/Notebook:CChi/2007-4-22\|Cynthia]] Think about how to deal with non OMIM hits, as in the context of what was discussed in class on Thursday		* [[Harvard:Biophysics_101/2007/Notebook:CChi/2007-4-22\|Cynthia]] Think about how to deal with non OMIM hits, as in the context of what was discussed in class on Thursday

Zsun at 05:57, 26 April 2007

Zsun — Thu, 26 Apr 2007 05:57:22 GMT

←Older revision		Revision as of 05:57, 26 April 2007
Line 6:		Line 6:
	'''Plans'''		'''Plans'''
	* [[Harvard:Biophysics_101/2007/Notebook:Christopher_Nabel/2007-4-19\|Chris]] Write SNP sequence parser and integrate QC code. Propose ideas for OMIM non-hits.		* [[Harvard:Biophysics_101/2007/Notebook:Christopher_Nabel/2007-4-19\|Chris]] Write SNP sequence parser and integrate QC code. Propose ideas for OMIM non-hits.
-	* Zach Finish CDC prevalence [[Harvard:Biophysics_101/Notebook:ZS/2007-4-22\| completion]], consolidate CDS mutation code from earlier (delayed) / determine CDS from a gene input or blast search [[Harvard:Biophysics_101/Notebook:ZS/2007-4-26 \| 4-26 almost complete]]	+	* Zach Finish CDC prevalence [[Harvard:Biophysics_101/Notebook:ZS/2007-4-22\| 4-24 completion]], consolidate CDS mutation code from earlier (delayed) / determine CDS from a gene input or blast search [[Harvard:Biophysics_101/Notebook:ZS/2007-4-26 \| 4-26 almost complete]]
	* [[TChan/Notebook/2007-4-22 \|Tiff]] Learn how to & parse HTML and XML to extract info from MedStory searches		* [[TChan/Notebook/2007-4-22 \|Tiff]] Learn how to & parse HTML and XML to extract info from MedStory searches
	* [[Harvard:Biophysics_101/2007/Notebook:CChi/2007-4-22\|Cynthia]] Think about how to deal with non OMIM hits, as in the context of what was discussed in class on Thursday		* [[Harvard:Biophysics_101/2007/Notebook:CChi/2007-4-22\|Cynthia]] Think about how to deal with non OMIM hits, as in the context of what was discussed in class on Thursday

Zsun at 05:57, 26 April 2007

Zsun — Thu, 26 Apr 2007 05:57:06 GMT

←Older revision		Revision as of 05:57, 26 April 2007
Line 6:		Line 6:
	'''Plans'''		'''Plans'''
	* [[Harvard:Biophysics_101/2007/Notebook:Christopher_Nabel/2007-4-19\|Chris]] Write SNP sequence parser and integrate QC code. Propose ideas for OMIM non-hits.		* [[Harvard:Biophysics_101/2007/Notebook:Christopher_Nabel/2007-4-19\|Chris]] Write SNP sequence parser and integrate QC code. Propose ideas for OMIM non-hits.
-	* Zach Finish CDC prevalence [[Harvard:Biophysics_101/Notebook:ZS/2007-4-22\| completion], consolidate CDS mutation code from earlier (delayed) / determine CDS from a gene input or blast search [Harvard:Biophysics_101/Notebook:ZS/2007-4-26 \| 4-26 almost complete]	+	* Zach Finish CDC prevalence [[Harvard:Biophysics_101/Notebook:ZS/2007-4-22\| completion]], consolidate CDS mutation code from earlier (delayed) / determine CDS from a gene input or blast search [[Harvard:Biophysics_101/Notebook:ZS/2007-4-26 \| 4-26 almost complete]]
	* [[TChan/Notebook/2007-4-22 \|Tiff]] Learn how to & parse HTML and XML to extract info from MedStory searches		* [[TChan/Notebook/2007-4-22 \|Tiff]] Learn how to & parse HTML and XML to extract info from MedStory searches
	* [[Harvard:Biophysics_101/2007/Notebook:CChi/2007-4-22\|Cynthia]] Think about how to deal with non OMIM hits, as in the context of what was discussed in class on Thursday		* [[Harvard:Biophysics_101/2007/Notebook:CChi/2007-4-22\|Cynthia]] Think about how to deal with non OMIM hits, as in the context of what was discussed in class on Thursday

Zsun at 05:56, 26 April 2007

Zsun — Thu, 26 Apr 2007 05:56:56 GMT

←Older revision		Revision as of 05:56, 26 April 2007
Line 6:		Line 6:
	'''Plans'''		'''Plans'''
	* [[Harvard:Biophysics_101/2007/Notebook:Christopher_Nabel/2007-4-19\|Chris]] Write SNP sequence parser and integrate QC code. Propose ideas for OMIM non-hits.		* [[Harvard:Biophysics_101/2007/Notebook:Christopher_Nabel/2007-4-19\|Chris]] Write SNP sequence parser and integrate QC code. Propose ideas for OMIM non-hits.
-	* [[Harvard:Biophysics_101/Notebook:ZS/2007-4-22\|~~Zach~~]~~] Finish CDC prevalence /~~ consolidate CDS mutation code from earlier / determine CDS from a gene input or blast search [~~[http://openwetware.org/wiki/~~Harvard:Biophysics_101/Notebook:ZS/2007-4-26 ~~progress~~]	+	* Zach Finish CDC prevalence [[Harvard:Biophysics_101/Notebook:ZS/2007-4-22\| completion], consolidate CDS mutation code from earlier (delayed) / determine CDS from a gene input or blast search [Harvard:Biophysics_101/Notebook:ZS/2007-4-26 \| 4-26 almost complete]
	* [[TChan/Notebook/2007-4-22 \|Tiff]] Learn how to & parse HTML and XML to extract info from MedStory searches		* [[TChan/Notebook/2007-4-22 \|Tiff]] Learn how to & parse HTML and XML to extract info from MedStory searches
	* [[Harvard:Biophysics_101/2007/Notebook:CChi/2007-4-22\|Cynthia]] Think about how to deal with non OMIM hits, as in the context of what was discussed in class on Thursday		* [[Harvard:Biophysics_101/2007/Notebook:CChi/2007-4-22\|Cynthia]] Think about how to deal with non OMIM hits, as in the context of what was discussed in class on Thursday

Zsun at 05:55, 26 April 2007

Zsun — Thu, 26 Apr 2007 05:55:42 GMT

←Older revision		Revision as of 05:55, 26 April 2007
Line 6:		Line 6:
	'''Plans'''		'''Plans'''
	* [[Harvard:Biophysics_101/2007/Notebook:Christopher_Nabel/2007-4-19\|Chris]] Write SNP sequence parser and integrate QC code. Propose ideas for OMIM non-hits.		* [[Harvard:Biophysics_101/2007/Notebook:Christopher_Nabel/2007-4-19\|Chris]] Write SNP sequence parser and integrate QC code. Propose ideas for OMIM non-hits.
-	* [[Harvard:Biophysics_101/Notebook:ZS/2007-4-22\|Zach]] Finish CDC prevalence / consolidate CDS mutation code from earlier / determine CDS from a gene input or blast search	+	* [[Harvard:Biophysics_101/Notebook:ZS/2007-4-22\|Zach]] Finish CDC prevalence / consolidate CDS mutation code from earlier / determine CDS from a gene input or blast search [[http://openwetware.org/wiki/Harvard:Biophysics_101/Notebook:ZS/2007-4-26 progress]
	* [[TChan/Notebook/2007-4-22 \|Tiff]] Learn how to & parse HTML and XML to extract info from MedStory searches		* [[TChan/Notebook/2007-4-22 \|Tiff]] Learn how to & parse HTML and XML to extract info from MedStory searches
	* [[Harvard:Biophysics_101/2007/Notebook:CChi/2007-4-22\|Cynthia]] Think about how to deal with non OMIM hits, as in the context of what was discussed in class on Thursday		* [[Harvard:Biophysics_101/2007/Notebook:CChi/2007-4-22\|Cynthia]] Think about how to deal with non OMIM hits, as in the context of what was discussed in class on Thursday

RCharalel at 03:41, 26 April 2007

RCharalel — Thu, 26 Apr 2007 03:41:19 GMT

←Older revision		Revision as of 03:41, 26 April 2007
Line 9:		Line 9:
	* [[TChan/Notebook/2007-4-22 \|Tiff]] Learn how to & parse HTML and XML to extract info from MedStory searches		* [[TChan/Notebook/2007-4-22 \|Tiff]] Learn how to & parse HTML and XML to extract info from MedStory searches
	* [[Harvard:Biophysics_101/2007/Notebook:CChi/2007-4-22\|Cynthia]] Think about how to deal with non OMIM hits, as in the context of what was discussed in class on Thursday		* [[Harvard:Biophysics_101/2007/Notebook:CChi/2007-4-22\|Cynthia]] Think about how to deal with non OMIM hits, as in the context of what was discussed in class on Thursday
-	* [[Harvard:Biophysics_101/2007/Notebook:Resmi Charalel/2007-4-19\|Resmi]] Finish code to parse out keywords from Pubmed and think about how we can process non-OMIM hits. [[Harvard:Biophysics_101/2007/Notebook:Resmi Charalel/2007-4-24\|~~See Here For~~ Progress]]	+	* [[Harvard:Biophysics_101/2007/Notebook:Resmi Charalel/2007-4-19\|Resmi]] Finish code to parse out keywords from Pubmed and think about how we can process non-OMIM hits. [[Harvard:Biophysics_101/2007/Notebook:Resmi Charalel/2007-4-24\|4-24 Progress]]; [[Harvard:Biophysics_101/2007/Notebook:Resmi Charalel/2007-4-26\|4-26 Progress]]
	* [[Harvard:Biophysics_101/2007/Notebook:Xiaodi Wu/2007-4-19\|Xiaodi]] Genbank file parsing to work around issues with OMIM; will hopefully fetch genes of note and characterize SNPs		* [[Harvard:Biophysics_101/2007/Notebook:Xiaodi Wu/2007-4-19\|Xiaodi]] Genbank file parsing to work around issues with OMIM; will hopefully fetch genes of note and characterize SNPs
	*[[Harvard:Biophysics_101/2007/Notebook:Denizkural/2007-4-24\|Deniz]] Bringing in the news, trials, news and such and keep working on the ranking.		*[[Harvard:Biophysics_101/2007/Notebook:Denizkural/2007-4-24\|Deniz]] Bringing in the news, trials, news and such and keep working on the ranking.
	* [[Harvard:Biophysics_101/2007/Notebook:MichaelWang/2007-4-19\|Michael]] Still examining the possibility of estimating allele frequency and maybe penetrance based on Hapmap data combined with epi studies of particular SNPs present within a given allele for a sequence. Also starting to code up something that will make a polyphen query to handle sequences not in OMIM but found in BLAST and get back some idea of whether or not the mutation may be deleterious.		* [[Harvard:Biophysics_101/2007/Notebook:MichaelWang/2007-4-19\|Michael]] Still examining the possibility of estimating allele frequency and maybe penetrance based on Hapmap data combined with epi studies of particular SNPs present within a given allele for a sequence. Also starting to code up something that will make a polyphen query to handle sequences not in OMIM but found in BLAST and get back some idea of whether or not the mutation may be deleterious.

Zsun at 06:22, 25 April 2007

Zsun — Wed, 25 Apr 2007 06:22:01 GMT

←Older revision		Revision as of 06:22, 25 April 2007
Line 6:		Line 6:
	'''Plans'''		'''Plans'''
	* [[Harvard:Biophysics_101/2007/Notebook:Christopher_Nabel/2007-4-19\|Chris]] Write SNP sequence parser and integrate QC code. Propose ideas for OMIM non-hits.		* [[Harvard:Biophysics_101/2007/Notebook:Christopher_Nabel/2007-4-19\|Chris]] Write SNP sequence parser and integrate QC code. Propose ideas for OMIM non-hits.
-	* [[Harvard:Biophysics_101/Notebook:ZS/2007-4-22\|Zach]] Finish CDC prevalence / consolidate CDS mutation code from earlier / ~~(tasks people need help on? email me and I can help out)~~	+	* [[Harvard:Biophysics_101/Notebook:ZS/2007-4-22\|Zach]] Finish CDC prevalence / consolidate CDS mutation code from earlier / determine CDS from a gene input or blast search
	* [[TChan/Notebook/2007-4-22 \|Tiff]] Learn how to & parse HTML and XML to extract info from MedStory searches		* [[TChan/Notebook/2007-4-22 \|Tiff]] Learn how to & parse HTML and XML to extract info from MedStory searches
	* [[Harvard:Biophysics_101/2007/Notebook:CChi/2007-4-22\|Cynthia]] Think about how to deal with non OMIM hits, as in the context of what was discussed in class on Thursday		* [[Harvard:Biophysics_101/2007/Notebook:CChi/2007-4-22\|Cynthia]] Think about how to deal with non OMIM hits, as in the context of what was discussed in class on Thursday

Geochurch at 14:12, 24 April 2007

Geochurch — Tue, 24 Apr 2007 14:12:58 GMT

←Older revision		Revision as of 14:12, 24 April 2007
Line 5:		Line 5:

	'''Plans'''		'''Plans'''
-	* [[Harvard:Biophysics_101/2007/Notebook:Christopher_Nabel/2007-4-19\|Chris]] Write SNP sequence parser and integrate QC code. Propose ideas for OMIM ~~DOA~~ hits.	+	* [[Harvard:Biophysics_101/2007/Notebook:Christopher_Nabel/2007-4-19\|Chris]] Write SNP sequence parser and integrate QC code. Propose ideas for OMIM non-hits.
	* [[Harvard:Biophysics_101/Notebook:ZS/2007-4-22\|Zach]] Finish CDC prevalence / consolidate CDS mutation code from earlier / (tasks people need help on? email me and I can help out)		* [[Harvard:Biophysics_101/Notebook:ZS/2007-4-22\|Zach]] Finish CDC prevalence / consolidate CDS mutation code from earlier / (tasks people need help on? email me and I can help out)
	* [[TChan/Notebook/2007-4-22 \|Tiff]] Learn how to & parse HTML and XML to extract info from MedStory searches		* [[TChan/Notebook/2007-4-22 \|Tiff]] Learn how to & parse HTML and XML to extract info from MedStory searches

Denizkural at 12:44, 24 April 2007

Denizkural — Tue, 24 Apr 2007 12:44:59 GMT

←Older revision		Revision as of 12:44, 24 April 2007
Line 11:		Line 11:
	* [[Harvard:Biophysics_101/2007/Notebook:Resmi Charalel/2007-4-19\|Resmi]] Finish code to parse out keywords from Pubmed and think about how we can process non-OMIM hits. [[Harvard:Biophysics_101/2007/Notebook:Resmi Charalel/2007-4-24\|See Here For Progress]]		* [[Harvard:Biophysics_101/2007/Notebook:Resmi Charalel/2007-4-19\|Resmi]] Finish code to parse out keywords from Pubmed and think about how we can process non-OMIM hits. [[Harvard:Biophysics_101/2007/Notebook:Resmi Charalel/2007-4-24\|See Here For Progress]]
	* [[Harvard:Biophysics_101/2007/Notebook:Xiaodi Wu/2007-4-19\|Xiaodi]] Genbank file parsing to work around issues with OMIM; will hopefully fetch genes of note and characterize SNPs		* [[Harvard:Biophysics_101/2007/Notebook:Xiaodi Wu/2007-4-19\|Xiaodi]] Genbank file parsing to work around issues with OMIM; will hopefully fetch genes of note and characterize SNPs
		+	*[[Harvard:Biophysics_101/2007/Notebook:Denizkural/2007-4-24\|Deniz]] Bringing in the news, trials, news and such and keep working on the ranking.
	* [[Harvard:Biophysics_101/2007/Notebook:MichaelWang/2007-4-19\|Michael]] Still examining the possibility of estimating allele frequency and maybe penetrance based on Hapmap data combined with epi studies of particular SNPs present within a given allele for a sequence. Also starting to code up something that will make a polyphen query to handle sequences not in OMIM but found in BLAST and get back some idea of whether or not the mutation may be deleterious.		* [[Harvard:Biophysics_101/2007/Notebook:MichaelWang/2007-4-19\|Michael]] Still examining the possibility of estimating allele frequency and maybe penetrance based on Hapmap data combined with epi studies of particular SNPs present within a given allele for a sequence. Also starting to code up something that will make a polyphen query to handle sequences not in OMIM but found in BLAST and get back some idea of whether or not the mutation may be deleterious.

Mdwang at 11:30, 24 April 2007

Mdwang — Tue, 24 Apr 2007 11:30:03 GMT

←Older revision		Revision as of 11:30, 24 April 2007
Line 11:		Line 11:
	* [[Harvard:Biophysics_101/2007/Notebook:Resmi Charalel/2007-4-19\|Resmi]] Finish code to parse out keywords from Pubmed and think about how we can process non-OMIM hits. [[Harvard:Biophysics_101/2007/Notebook:Resmi Charalel/2007-4-24\|See Here For Progress]]		* [[Harvard:Biophysics_101/2007/Notebook:Resmi Charalel/2007-4-19\|Resmi]] Finish code to parse out keywords from Pubmed and think about how we can process non-OMIM hits. [[Harvard:Biophysics_101/2007/Notebook:Resmi Charalel/2007-4-24\|See Here For Progress]]
	* [[Harvard:Biophysics_101/2007/Notebook:Xiaodi Wu/2007-4-19\|Xiaodi]] Genbank file parsing to work around issues with OMIM; will hopefully fetch genes of note and characterize SNPs		* [[Harvard:Biophysics_101/2007/Notebook:Xiaodi Wu/2007-4-19\|Xiaodi]] Genbank file parsing to work around issues with OMIM; will hopefully fetch genes of note and characterize SNPs
		+	* [[Harvard:Biophysics_101/2007/Notebook:MichaelWang/2007-4-19\|Michael]] Still examining the possibility of estimating allele frequency and maybe penetrance based on Hapmap data combined with epi studies of particular SNPs present within a given allele for a sequence. Also starting to code up something that will make a polyphen query to handle sequences not in OMIM but found in BLAST and get back some idea of whether or not the mutation may be deleterious.

←Older revision		Revision as of 05:57, 26 April 2007
Line 6:		Line 6:
	'''Plans'''		'''Plans'''
	* [[Harvard:Biophysics_101/2007/Notebook:Christopher_Nabel/2007-4-19\|Chris]] Write SNP sequence parser and integrate QC code. Propose ideas for OMIM non-hits.		* [[Harvard:Biophysics_101/2007/Notebook:Christopher_Nabel/2007-4-19\|Chris]] Write SNP sequence parser and integrate QC code. Propose ideas for OMIM non-hits.
-	* Zach Finish CDC prevalence [[Harvard:Biophysics_101/Notebook:ZS/2007-4-22\| 4-24 completion]], consolidate CDS mutation code from earlier (delayed) / determine CDS from a gene input or blast search [[Harvard:Biophysics_101/Notebook:ZS/2007-4-26 \| 4-26 almost complete]]	+	* Zach Finish CDC prevalence [[Harvard:Biophysics_101/Notebook:ZS/2007-4-22\| 4-24 completion]] / consolidate CDS mutation code from earlier (delayed) / determine CDS from a gene input or blast search [[Harvard:Biophysics_101/Notebook:ZS/2007-4-26 \| 4-26 almost complete]]
	* [[TChan/Notebook/2007-4-22 \|Tiff]] Learn how to & parse HTML and XML to extract info from MedStory searches		* [[TChan/Notebook/2007-4-22 \|Tiff]] Learn how to & parse HTML and XML to extract info from MedStory searches
	* [[Harvard:Biophysics_101/2007/Notebook:CChi/2007-4-22\|Cynthia]] Think about how to deal with non OMIM hits, as in the context of what was discussed in class on Thursday		* [[Harvard:Biophysics_101/2007/Notebook:CChi/2007-4-22\|Cynthia]] Think about how to deal with non OMIM hits, as in the context of what was discussed in class on Thursday

←Older revision		Revision as of 05:57, 26 April 2007
Line 6:		Line 6:
	'''Plans'''		'''Plans'''
	* [[Harvard:Biophysics_101/2007/Notebook:Christopher_Nabel/2007-4-19\|Chris]] Write SNP sequence parser and integrate QC code. Propose ideas for OMIM non-hits.		* [[Harvard:Biophysics_101/2007/Notebook:Christopher_Nabel/2007-4-19\|Chris]] Write SNP sequence parser and integrate QC code. Propose ideas for OMIM non-hits.
-	* Zach Finish CDC prevalence [[Harvard:Biophysics_101/Notebook:ZS/2007-4-22\| completion]], consolidate CDS mutation code from earlier (delayed) / determine CDS from a gene input or blast search [[Harvard:Biophysics_101/Notebook:ZS/2007-4-26 \| 4-26 almost complete]]	+	* Zach Finish CDC prevalence [[Harvard:Biophysics_101/Notebook:ZS/2007-4-22\| 4-24 completion]], consolidate CDS mutation code from earlier (delayed) / determine CDS from a gene input or blast search [[Harvard:Biophysics_101/Notebook:ZS/2007-4-26 \| 4-26 almost complete]]
	* [[TChan/Notebook/2007-4-22 \|Tiff]] Learn how to & parse HTML and XML to extract info from MedStory searches		* [[TChan/Notebook/2007-4-22 \|Tiff]] Learn how to & parse HTML and XML to extract info from MedStory searches
	* [[Harvard:Biophysics_101/2007/Notebook:CChi/2007-4-22\|Cynthia]] Think about how to deal with non OMIM hits, as in the context of what was discussed in class on Thursday		* [[Harvard:Biophysics_101/2007/Notebook:CChi/2007-4-22\|Cynthia]] Think about how to deal with non OMIM hits, as in the context of what was discussed in class on Thursday

←Older revision		Revision as of 05:57, 26 April 2007
Line 6:		Line 6:
	'''Plans'''		'''Plans'''
	* [[Harvard:Biophysics_101/2007/Notebook:Christopher_Nabel/2007-4-19\|Chris]] Write SNP sequence parser and integrate QC code. Propose ideas for OMIM non-hits.		* [[Harvard:Biophysics_101/2007/Notebook:Christopher_Nabel/2007-4-19\|Chris]] Write SNP sequence parser and integrate QC code. Propose ideas for OMIM non-hits.
-	* Zach Finish CDC prevalence [[Harvard:Biophysics_101/Notebook:ZS/2007-4-22\| completion], consolidate CDS mutation code from earlier (delayed) / determine CDS from a gene input or blast search [Harvard:Biophysics_101/Notebook:ZS/2007-4-26 \| 4-26 almost complete]	+	* Zach Finish CDC prevalence [[Harvard:Biophysics_101/Notebook:ZS/2007-4-22\| completion]], consolidate CDS mutation code from earlier (delayed) / determine CDS from a gene input or blast search [[Harvard:Biophysics_101/Notebook:ZS/2007-4-26 \| 4-26 almost complete]]
	* [[TChan/Notebook/2007-4-22 \|Tiff]] Learn how to & parse HTML and XML to extract info from MedStory searches		* [[TChan/Notebook/2007-4-22 \|Tiff]] Learn how to & parse HTML and XML to extract info from MedStory searches
	* [[Harvard:Biophysics_101/2007/Notebook:CChi/2007-4-22\|Cynthia]] Think about how to deal with non OMIM hits, as in the context of what was discussed in class on Thursday		* [[Harvard:Biophysics_101/2007/Notebook:CChi/2007-4-22\|Cynthia]] Think about how to deal with non OMIM hits, as in the context of what was discussed in class on Thursday

←Older revision		Revision as of 05:56, 26 April 2007
Line 6:		Line 6:
	'''Plans'''		'''Plans'''
	* [[Harvard:Biophysics_101/2007/Notebook:Christopher_Nabel/2007-4-19\|Chris]] Write SNP sequence parser and integrate QC code. Propose ideas for OMIM non-hits.		* [[Harvard:Biophysics_101/2007/Notebook:Christopher_Nabel/2007-4-19\|Chris]] Write SNP sequence parser and integrate QC code. Propose ideas for OMIM non-hits.
-	* [[Harvard:Biophysics_101/Notebook:ZS/2007-4-22\|~~Zach~~]~~] Finish CDC prevalence /~~ consolidate CDS mutation code from earlier / determine CDS from a gene input or blast search [~~[http://openwetware.org/wiki/~~Harvard:Biophysics_101/Notebook:ZS/2007-4-26 ~~progress~~]	+	* Zach Finish CDC prevalence [[Harvard:Biophysics_101/Notebook:ZS/2007-4-22\| completion], consolidate CDS mutation code from earlier (delayed) / determine CDS from a gene input or blast search [Harvard:Biophysics_101/Notebook:ZS/2007-4-26 \| 4-26 almost complete]
	* [[TChan/Notebook/2007-4-22 \|Tiff]] Learn how to & parse HTML and XML to extract info from MedStory searches		* [[TChan/Notebook/2007-4-22 \|Tiff]] Learn how to & parse HTML and XML to extract info from MedStory searches
	* [[Harvard:Biophysics_101/2007/Notebook:CChi/2007-4-22\|Cynthia]] Think about how to deal with non OMIM hits, as in the context of what was discussed in class on Thursday		* [[Harvard:Biophysics_101/2007/Notebook:CChi/2007-4-22\|Cynthia]] Think about how to deal with non OMIM hits, as in the context of what was discussed in class on Thursday

←Older revision		Revision as of 05:55, 26 April 2007
Line 6:		Line 6:
	'''Plans'''		'''Plans'''
	* [[Harvard:Biophysics_101/2007/Notebook:Christopher_Nabel/2007-4-19\|Chris]] Write SNP sequence parser and integrate QC code. Propose ideas for OMIM non-hits.		* [[Harvard:Biophysics_101/2007/Notebook:Christopher_Nabel/2007-4-19\|Chris]] Write SNP sequence parser and integrate QC code. Propose ideas for OMIM non-hits.
-	* [[Harvard:Biophysics_101/Notebook:ZS/2007-4-22\|Zach]] Finish CDC prevalence / consolidate CDS mutation code from earlier / determine CDS from a gene input or blast search	+	* [[Harvard:Biophysics_101/Notebook:ZS/2007-4-22\|Zach]] Finish CDC prevalence / consolidate CDS mutation code from earlier / determine CDS from a gene input or blast search [[http://openwetware.org/wiki/Harvard:Biophysics_101/Notebook:ZS/2007-4-26 progress]
	* [[TChan/Notebook/2007-4-22 \|Tiff]] Learn how to & parse HTML and XML to extract info from MedStory searches		* [[TChan/Notebook/2007-4-22 \|Tiff]] Learn how to & parse HTML and XML to extract info from MedStory searches
	* [[Harvard:Biophysics_101/2007/Notebook:CChi/2007-4-22\|Cynthia]] Think about how to deal with non OMIM hits, as in the context of what was discussed in class on Thursday		* [[Harvard:Biophysics_101/2007/Notebook:CChi/2007-4-22\|Cynthia]] Think about how to deal with non OMIM hits, as in the context of what was discussed in class on Thursday