Harvard:Biophysics 101/2007/Notebook:CChi/2007-3-15: Difference between revisions

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(New page: == Assignment due 3/15 == '''Task 1''' Input Sequence: <pre> >example1 CACCCTCGCCAGTTACGAGCTGCCGAGCCGCTTCCTAGGCTCTCT...)
(No difference)

Revision as of 22:47, 14 March 2007

Assignment due 3/15

Task 1

Input Sequence:

>example1                                                                      
CACCCTCGCCAGTTACGAGCTGCCGAGCCGCTTCCTAGGCTCTCTGCGAATACGGACACG                    
CATGCCACCCACAACAACTTTTTAAAAGAATCAGACGTGTGAAGGATTCTATTCGAATTA                    
CTTCTGCTCTCTGCTTTTATCACTTCACTGTGGGTCTGGGCGCGGGCTTTCTGCCAGCTC                    
CGCGGACGCTGCCTTCGTCCAGCCGCAGAGGCCCCGCGGTCAGGGTCCCGCGTGCGGGGT                    
ACCGGGGGCAGAACCAGCGCGTGACCGGGGTCCGCGGTGCCGCAACGCCCCGGGTCTGCG                    
CAGAGGCCCCTGCAGTCCCTGCCCGGCCCAGTCCGAGCTTCCCGGGCGGGCCCCCAGTCC                    
GGCGATTTGCAGGAACTTTCCCCGGCGCTCCCACGCGAAGC 

Manual Interpretation:

  • NCBI BLAST of sequence aligns it with Homo sapiens chromosome 10 genomic contig, reference assembly
  • 1 snp at position 250 of the sequence: G to A

<more to come in the morning...>