Harvard:Biophysics 101/2007/Notebook:Katie Fifer/2007-3-15: Difference between revisions
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NT_030059.12 Homo sapiens chromosome 10 genomic contig | Just realized this should be private, so STOP reading if you haven't done it yet, since it's sort of too late to erase as its cached in history. | ||
mutation G to A at position 201 | |||
*NT_030059.12 Homo sapiens chromosome 10 genomic contig | |||
*mutation G to A at position 201 | |||
*used BLAST to figure out which gene and which mutation | |||
*because of where the start codon is, the mutation is CGG to CAG... arginine to glutamine. This probably is not too big a deal, but I don't know anything about proteins really so I'm not sure. | |||
*search OMIM - didn't really find anything but not sure I totally understand all the resources available in OMIM | |||
<pre> | <pre> | ||
Query 1 CACCCTCGCCAGTTACGAGCTGCCGAGCCGCTTCCTAGGCTCTCTGCGAATACGGACACG 60 | Query 1 CACCCTCGCCAGTTACGAGCTGCCGAGCCGCTTCCTAGGCTCTCTGCGAATACGGACACG 60 | ||
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Sbjct 42969230 GGCGATTTGCAGGAACTTTCCCCGGCGCTCCCACGCGAAGC 42969270 | Sbjct 42969230 GGCGATTTGCAGGAACTTTCCCCGGCGCTCCCACGCGAAGC 42969270 | ||
</pre> | |||
Task2 | |||
<pre> | |||
>katie | |||
CTGTGTCTGT AAACTGATGG CTAACAAAAC TAGGATTTTG GTCACTTCTA AAATGGAACA TTTAAAGAAA GCT | |||
GACAAAA TATTAATTTT GCATGAAGGT AGCAGCTATT TTTATGGGAC ATTTTCAGAA CTCCAAAATC TACAGC | |||
CAGA CTTTAGCTCA AAACTCATGG GATGTGATTC TTTCGACCAA TTTAGTGCAG AAAGAAGAAA TTCAATCCT | |||
A ACTGAGACCT TACACCGTTT CTCATTAGAA GGAGATGCTC CTGTCTCCTG GACAGAAACA AAAAAACAAT C | |||
TTTTAAACA GACTGGAGAG TTTGGGGAAA AAAGGAAGAA TTCTATTCTC AATCCAATCA ACTCTATACG AAAA | |||
TTTTCC ATTGTGCAAA AGACTCCCTT ACAAATGAAT GGCATCGAAG AGGATTCTGA TGAGCCTTTA GAGAGAA | |||
GGC TGTCCTTAGT ACCAGATTCT GAGCAGGGAG AGGCGATACT GCCTCGCATC AGCGTGATCA GCACTGGCCC | |||
CACGCTTCAG GCACGAAGGA GGCAGTCTGT CCTGAACCTG ATGACACACT CAGTTAACCA AGGTCAGAAC AT | |||
TCACCGAA AGACAACAGC ATCCACACGA AAAGTGTCAC TGGCCCCTCA GGCAAACTTG ACTGAACTGG ATATA | |||
TATTC AAGAAGGTTA TCTCAAGAAA CTGGCTTGGA AATAAGTGAA GAAATTAACG AAGAAGACTT AAAG | |||
</pre> | </pre> |
Latest revision as of 06:33, 16 March 2007
Just realized this should be private, so STOP reading if you haven't done it yet, since it's sort of too late to erase as its cached in history.
- NT_030059.12 Homo sapiens chromosome 10 genomic contig
- mutation G to A at position 201
- used BLAST to figure out which gene and which mutation
- because of where the start codon is, the mutation is CGG to CAG... arginine to glutamine. This probably is not too big a deal, but I don't know anything about proteins really so I'm not sure.
- search OMIM - didn't really find anything but not sure I totally understand all the resources available in OMIM
Query 1 CACCCTCGCCAGTTACGAGCTGCCGAGCCGCTTCCTAGGCTCTCTGCGAATACGGACACG 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 42968870 CACCCTCGCCAGTTACGAGCTGCCGAGCCGCTTCCTAGGCTCTCTGCGAATACGGACACG 42968929 Query 61 CATGCCACCCACAACAACTTTTTAAAAGAATCAGACGTGTGAAGGATTCTATTCGAATTA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 42968930 CATGCCACCCACAACAACTTTTTAAAAGAATCAGACGTGTGAAGGATTCTATTCGAATTA 42968989 Query 121 CTTCTGCTCTCTGCTTTTATCACTTCACTGTGGGTCTGGGCGCGGGCTTTCTGCCAGCTC 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 42968990 CTTCTGCTCTCTGCTTTTATCACTTCACTGTGGGTCTGGGCGCGGGCTTTCTGCCAGCTC 42969049 Query 181 CGCGGACGCTGCCTTCGTCCAGCCGCAGAGGCCCCGCGGTCAGGGTCCCGCGTGCGGGGT 240 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 42969050 CGCGGACGCTGCCTTCGTCCGGCCGCAGAGGCCCCGCGGTCAGGGTCCCGCGTGCGGGGT 42969109 Query 241 ACCGGGGGCAGAACCAGCGCGTGACCGGGGTCCGCGGTGCCGCAACGCCCCGGGTCTGCG 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 42969110 ACCGGGGGCAGAACCAGCGCGTGACCGGGGTCCGCGGTGCCGCAACGCCCCGGGTCTGCG 42969169 Query 301 CAGAGGCCCCTGCAGTCCCTGCCCGGCCCAGTCCGAGCTTCCCGGGCGGGCCCCCAGTCC 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 42969170 CAGAGGCCCCTGCAGTCCCTGCCCGGCCCAGTCCGAGCTTCCCGGGCGGGCCCCCAGTCC 42969229 Query 361 GGCGATTTGCAGGAACTTTCCCCGGCGCTCCCACGCGAAGC 401 ||||||||||||||||||||||||||||||||||||||||| Sbjct 42969230 GGCGATTTGCAGGAACTTTCCCCGGCGCTCCCACGCGAAGC 42969270
Task2
>katie CTGTGTCTGT AAACTGATGG CTAACAAAAC TAGGATTTTG GTCACTTCTA AAATGGAACA TTTAAAGAAA GCT GACAAAA TATTAATTTT GCATGAAGGT AGCAGCTATT TTTATGGGAC ATTTTCAGAA CTCCAAAATC TACAGC CAGA CTTTAGCTCA AAACTCATGG GATGTGATTC TTTCGACCAA TTTAGTGCAG AAAGAAGAAA TTCAATCCT A ACTGAGACCT TACACCGTTT CTCATTAGAA GGAGATGCTC CTGTCTCCTG GACAGAAACA AAAAAACAAT C TTTTAAACA GACTGGAGAG TTTGGGGAAA AAAGGAAGAA TTCTATTCTC AATCCAATCA ACTCTATACG AAAA TTTTCC ATTGTGCAAA AGACTCCCTT ACAAATGAAT GGCATCGAAG AGGATTCTGA TGAGCCTTTA GAGAGAA GGC TGTCCTTAGT ACCAGATTCT GAGCAGGGAG AGGCGATACT GCCTCGCATC AGCGTGATCA GCACTGGCCC CACGCTTCAG GCACGAAGGA GGCAGTCTGT CCTGAACCTG ATGACACACT CAGTTAACCA AGGTCAGAAC AT TCACCGAA AGACAACAGC ATCCACACGA AAAGTGTCAC TGGCCCCTCA GGCAAACTTG ACTGAACTGG ATATA TATTC AAGAAGGTTA TCTCAAGAAA CTGGCTTGGA AATAAGTGAA GAAATTAACG AAGAAGACTT AAAG