Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-4-5: Difference between revisions
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(New page: ==OMIM to Review Articles in Pubmed== *The following is the code to return a list of review references for the disease returned through Xiaodi's code. <\pre> from Bio import PubMed fro...) |
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*The following is the code to return a list of review references for the disease returned through Xiaodi's code. | *The following is the code to return a list of review references for the disease returned through Xiaodi's code. | ||
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from Bio import PubMed | from Bio import PubMed | ||
from Bio import Medline | from Bio import Medline | ||
Latest revision as of 08:30, 5 April 2007
OMIM to Review Articles in Pubmed
- The following is the code to return a list of review references for the disease returned through Xiaodi's code.
from Bio import PubMed
from Bio import Medline
import string
disease = a.name
search_term = "Review[ptyp] "+disease
#print search_term
review_ids = PubMed.search_for(search_term)
rec_parser = Medline.RecordParser()
medline_dict = PubMed.Dictionary(parser = rec_parser)
count = 1
for did in review_ids[0:5]:
cur_record = medline_dict[did]
print '\n', count, ') ', string.rstrip(cur_record.title), cur_record.authors, string.strip(cur_record.source)
count=count+1