Harvard:Biophysics 101/2007/Project: Difference between revisions
From OpenWetWare
Jump to navigationJump to search
Denizkural (talk | contribs) |
Denizkural (talk | contribs) |
||
| Line 42: | Line 42: | ||
:* Webmd (Tiff) | :* Webmd (Tiff) | ||
:* Emedicine (Resmi) | :* Emedicine (Resmi) | ||
:* Google, Medstory. | :* Google, Medstory. (Deniz) | ||
:* Linking out of XML (Xiaodi) | :* Linking out of XML (Xiaodi) | ||
:* MedStory (Mike?) | :* MedStory (Mike?) | ||
Revision as of 04:27, 22 March 2007
Project Sections
- Could someone who typed this up today please add the other sections that are being worked on? --TChan, 12:47 20 March 2007
OMIM Parsing
- Resmi, Cynthia, and Hetmann
BLAST SNP to OMIM
- Zach, Mike, and Tiffany
BioPython Modification
- Relevant file: Python25/Lib/site-packages/Bio/Blast/NCBIWWW.py
- Discussion on BLAST SNP can proceed on the discussion page.
- Seq--> BlastSNP --> rs# (former hard, latter easy)
- Modifying BioPython BLAST
Parsing XML from #2 in python
- Deniz
- OMIM download
Integration
- Katie
- PM / encourage documentation
OMIM XML Parse
- Xiaodi - completed?
- rs-->OMIM XML parse -> phenotype text
Chris
- if one gets multiple SNPs, which is revelant?
- linking to PubMED after finding disease
Kay
Beyond OMIM
- Tiffany, Resmi, Deniz, Xiaodi, Mike (note: ask if API exists)
- Wikipedia (Mike) http://meta.wikimedia.org/wiki/API
- Webmd (Tiff)
- Emedicine (Resmi)
- Google, Medstory. (Deniz)
- Linking out of XML (Xiaodi)
- MedStory (Mike?)
Unassigned
- not in SNP db... then what? - I'd like to point out new efforts that aim to replace OMIM, called the "Human Variome Project" -- Deniz
- OMIM DOA
- systematically nonsyn. -> mutation not in OMIM or dbSNP?
- other dbs: genecard (spec. conservation, pop. freq)
- looking into linking gene expression w/ GEO?
Project Ideas
Project ideas have been moved to their own page.
