Harvard:Biophysics 101/2007:Python

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(Python)
Current revision (20:37, 19 April 2007) (view source)
(Python: - charming python link)
 
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*[http://diveintopython.org/installing_python/index.html alternative instructions]
*[http://diveintopython.org/installing_python/index.html alternative instructions]
-
'''Documentation'''
+
'''Reading Material'''
*[http://docs.python.org/tut/tut.html Python Tutorial]
*[http://docs.python.org/tut/tut.html Python Tutorial]
*[http://www.python.org/dev/peps/pep-0008/ Python Style Guide]
*[http://www.python.org/dev/peps/pep-0008/ Python Style Guide]
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*[http://www.amk.ca/python/howto/regex/ Py Reg Ex] (regular expressions)
*[http://www.amk.ca/python/howto/regex/ Py Reg Ex] (regular expressions)
*[http://www.python.org/doc/2.4.1/lib/lib.html Python Lib Ref]
*[http://www.python.org/doc/2.4.1/lib/lib.html Python Lib Ref]
 +
*[http://tinyurl.com/2mvzs7 Charming Python] (advanced topics)
==BioPython==
==BioPython==
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python setup.py install
python setup.py install
</pre>
</pre>
-
*Download and extract [http://biopython.org/wiki/Download BioPython] source file
+
*Download and extract [http://biopython.org/wiki/Download BioPython] source file (latest tar.gz file)
-
**http://biopython.org/DIST/biopython-1.42.tar.gz
+
*From the extracted directory, run the following commands:
*From the extracted directory, run the following commands:
<pre>
<pre>

Current revision

Biophysics 101: Genomics, Computing, and Economics

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Python

Installation

Reading Material

BioPython

Documentation

Pre-installation dependencies

Windows Installation

OS X Installation

python setup.py build
python setup.py install
  • Download and extract BioPython source file (latest tar.gz file)
  • From the extracted directory, run the following commands:
python setup.py build
python setup.py test
python setup.py install

Linux

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