Harvard:Biophysics 101/2007:Schedule

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| align="center" style="background:#f0f0f0; width:100px;"|'''Date'''
| align="center" style="background:#f0f0f0; width:100px;"|'''Date'''
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| align="center" style="background:#f0f0f0; width:150px;"|'''Presenter'''
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| align="center" style="background:#f0f0f0; width:150px;"|'''Presenter(s)'''
| align="center" style="background:#f0f0f0;"|'''Topic'''
| align="center" style="background:#f0f0f0;"|'''Topic'''
| align="center" style="background:#f0f0f0;"|'''Slides'''
| align="center" style="background:#f0f0f0;"|'''Slides'''
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| [[Harvard:Biophysics_101/2007/02/01|February 1]]||George Church||Introduction||[[Media:HarvardBiophysics101-1.ppt|PPT]]
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| [[Harvard:Biophysics_101/2007/02/01|February 1]]||George Church||Introduction<br>Human "experiment"||[[Media:HarvardBiophysics101-1.ppt|PPT]]
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|-
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| [[Harvard:Biophysics_101/2007/02/06|February 6]]||George Church||||
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| [[Harvard:Biophysics_101/2007/02/06|February 6]]||George Church<br>Shawn Douglas||Results from "experiment"<br> combinatorics, binomial distributions<br>exponentials in Excel<br> Python walkthrough||[[Media:HarvardBiophysics101-2.ppt|PPT]]
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| [[Harvard:Biophysics_101/2007/02/08|February 8]]||||||
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| [[Harvard:Biophysics_101/2007/02/08|February 8]]||George Church||Entropy & Complexity<br>Memory & Storage<br>Probability Distributions||[[Media:HarvardBiophysics101-3.ppt|PPT]]
|-
|-
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| [[Harvard:Biophysics_101/2007/02/13|February 13]]||||||
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| [[Harvard:Biophysics_101/2007/02/13|February 13]]||George Church||Binomial, Poisson and Normal distributions<br>Class discussion||[[Media:HarvardBiophysics101-4.ppt|PPT]]
|-
|-
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| [[Harvard:Biophysics_101/2007/02/15|February 15]]||||||
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| [[Harvard:Biophysics_101/2007/02/15|February 15]]||George Church||Easter Island & Discussion<br>Quantifying bioenergy requirements<br>Flux balance analysis||[[Media:HarvardBiophysics101-5.ppt|PPT]]
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|-
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| [[Harvard:Biophysics_101/2007/02/20|February 20]]||||||
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| [[Harvard:Biophysics_101/2007/02/20|February 20]]||George Church||Flux balance continued... || [[Media:HarvardBiophysics101-6.ppt|PPT]]
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|-
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| [[Harvard:Biophysics_101/2007/02/22|February 22]]||||||
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| [[Harvard:Biophysics_101/2007/02/22|February 22]]|| Morten Sommer and Shawn Douglas || Final project brainstorming || [[Media:ApoE_assignment.ppt|PPT]]
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|-
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| [[Harvard:Biophysics_101/2007/02/27|February 27]]||||||
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| [[Harvard:Biophysics_101/2007/02/27|February 27]]||George Church||HapMap Data||[[Media:HarvardBiophysics101-7.ppt|PPT]]
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|-
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| [[Harvard:Biophysics_101/2007/03/01|March 1]]||||||
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| [[Harvard:Biophysics_101/2007/03/01|March 1]]||George Church||Nutri/Pharmacogenomics||[[Media:HarvardBiophysics101-8.ppt|PPT]]
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|-
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| [[Harvard:Biophysics_101/2007/03/06|March 6]]||||||
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| [[Harvard:Biophysics_101/2007/03/06|March 6]]||Class discussion||Projects || ---
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|-
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| [[Harvard:Biophysics_101/2007/03/08|March 8]]||||||
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| [[Harvard:Biophysics_101/2007/03/08|March 8]]||Class discussion||Projects in more detail||[[Media:HarvardBiophysics101-9.ppt|PPT]]
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|-
|-
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| [[Harvard:Biophysics_101/2007/03/13|March 13]]||||||
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| [[Harvard:Biophysics_101/2007/03/13|March 13]]||George Church||Mutations||[[Media:HarvardBiophysics101-10.ppt|PPT]]
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|-
|-
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| [[Harvard:Biophysics_101/2007/03/15|March 15]]||||||
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| [[Harvard:Biophysics_101/2007/03/15|March 15]]||Class discussion||Homework: Automated sequence analysis||---
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|-
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| [[Harvard:Biophysics_101/2007/03/20|March 20]]||||||
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| [[Harvard:Biophysics_101/2007/03/20|March 20]]||Class discussion|| Division of labor||---
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| [[Harvard:Biophysics_101/2007/03/22|March 22]]||||||
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| [[Harvard:Biophysics_101/2007/03/22|March 22]]||George Church, Visitor: Esther Dyson || Case Study #2: Narcolepsy  ||[[Media:HarvardBiophysics101-DQB1.pdf|PDF]]
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|-
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| [[Harvard:Biophysics_101/2007/04/03|April 3]]||||||
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| [[Harvard:Biophysics_101/2007/04/03|April 3]]||Morten Sommer and Shawn Douglas || Visitor: Joe Chou<br>Project planning ||---
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|-
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| [[Harvard:Biophysics_101/2007/04/05|April 5]]||||||
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| [[Harvard:Biophysics_101/2007/04/05|April 5]]||Morten Sommer and Shawn Douglas || Group work ||---
|-
|-
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| [[Harvard:Biophysics_101/2007/04/10|April 10]]||||||
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| [[Harvard:Biophysics_101/2007/04/10|April 10]]||George Church || Project discussion ||---
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|-
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| [[Harvard:Biophysics_101/2007/04/12|April 12]]||||||
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| [[Harvard:Biophysics_101/2007/04/12|April 12]]|| George Church || Multisequence alignment, Hidden Markov Models ||[[Media:HarvardBiophysics101-11.ppt|PPT]]
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|-
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| [[Harvard:Biophysics_101/2007/04/17|April 17]]||||||
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| [[Harvard:Biophysics_101/2007/04/17|April 17]]|| George Church, Visitor: Kirk Maxey|| Project discussion||---
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|-
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| [[Harvard:Biophysics_101/2007/04/19|April 19]]||||||
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| [[Harvard:Biophysics_101/2007/04/19|April 19]]||George Church || More Bayes, epistasis, allele frequencies ||[[Media:HarvardBiophysics101-12.ppt|PPT]]
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|-
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| [[Harvard:Biophysics_101/2007/04/24|April 24]]||||||
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| [[Harvard:Biophysics_101/2007/04/24|April 24]]|| All ||Project planning  ||
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|-
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| [[Harvard:Biophysics_101/2007/04/26|April 26]]||||||
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| [[Harvard:Biophysics_101/2007/04/26|April 26]]||George Church || ||
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| [[Harvard:Biophysics_101/2007/05/01|May 1]]||||||
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| [[Harvard:Biophysics_101/2007/05/01|May 1]]|| || ||
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| [[Harvard:Biophysics_101/2007/05/03|May 3]]||||||
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| [[Harvard:Biophysics_101/2007/05/03|May 3]]|| || ||
|}
|}
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Current revision

Biophysics 101: Genomics, Computing, and Economics

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Date Presenter(s) Topic Slides
February 1George ChurchIntroduction
Human "experiment"
PPT
February 6George Church
Shawn Douglas
Results from "experiment"
combinatorics, binomial distributions
exponentials in Excel
Python walkthrough
PPT
February 8George ChurchEntropy & Complexity
Memory & Storage
Probability Distributions
PPT
February 13George ChurchBinomial, Poisson and Normal distributions
Class discussion
PPT
February 15George ChurchEaster Island & Discussion
Quantifying bioenergy requirements
Flux balance analysis
PPT
February 20George ChurchFlux balance continued... PPT
February 22 Morten Sommer and Shawn Douglas Final project brainstorming PPT
February 27George ChurchHapMap DataPPT
March 1George ChurchNutri/PharmacogenomicsPPT
March 6Class discussionProjects ---
March 8Class discussionProjects in more detailPPT
March 13George ChurchMutationsPPT
March 15Class discussionHomework: Automated sequence analysis---
March 20Class discussion Division of labor---
March 22George Church, Visitor: Esther Dyson Case Study #2: Narcolepsy PDF
April 3Morten Sommer and Shawn Douglas Visitor: Joe Chou
Project planning
---
April 5Morten Sommer and Shawn Douglas Group work ---
April 10George Church Project discussion ---
April 12 George Church Multisequence alignment, Hidden Markov Models PPT
April 17 George Church, Visitor: Kirk Maxey Project discussion---
April 19George Church More Bayes, epistasis, allele frequencies PPT
April 24 All Project planning
April 26George Church
May 1
May 3
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