Harvard:Biophysics 101/2009: Difference between revisions

From OpenWetWare
Jump to navigationJump to search
No edit summary
No edit summary
Line 6: Line 6:


==Potential course projects==
==Potential course projects==
'''H. sapiens 2.0'''
*Analytic: See [http://openwetware.org/wiki/Harvard:Biophysics_101/2007/Project Biophysics101 2007 Class Project] [http://arep.med.harvard.edu/PGP/ Personal Genome Project].
*Synthetic: Cell therapies – See [http://www.synberc.org/testbeds.html#cancerkiller Tumor Killing Bacteria] for more info
'''Earth 2.0'''
'''Earth 2.0'''
*Analytic: Bioweather map. Collection and use of real-time assays to track virus outbreaks, etc.
*Analytic: Bioweather map. Collection and use of real-time assays to track virus outbreaks, etc.
*Synthetic: [http://www.energy.gov/energysources/bioenergy.htm Bioenergy]. Integrated metabolic, genetic, economic, process, environmental modeling.
*Synthetic: [http://www.energy.gov/energysources/bioenergy.htm Bioenergy]. Integrated metabolic, genetic, economic, process, environmental modeling.
'''H. sapiens 2.0'''
*Analytic: See [http://openwetware.org/wiki/Harvard:Biophysics_101/2007/Project Biophysics101 2007 Class Project] What could we do with a ten (or a million) full genome (or exome) sequences? [http://arep.med.harvard.edu/PGP/ Personal Genome Project].
*Synthetic: Cell therapies – See [http://www.synberc.org/testbeds.html#cancerkiller Tumor Killing Bacteria] for more info


==Logistics==
==Logistics==
Line 25: Line 25:
**50% Contribution to group project
**50% Contribution to group project


==Background Info and previous class projects==
==Previous Course Links==
* [http://openwetware.org/wiki/Harvard:Biophysics_101/2007/ 2007]  
* [http://openwetware.org/wiki/Harvard:Biophysics_101/2007/ 2007]  
* [http://bio.freelogy.org/wiki/Biophysics_101 2005]
* [http://bio.freelogy.org/wiki/Biophysics_101 2005]

Revision as of 12:33, 28 December 2008

Biophysics 101: Genomics, Computing, and Economics

Home        People        Schedule        Project        Assignments        Python        Help       

Course overview

Focuses on modern technologies with exponential growth and their impact on global quality of life through weekly updated Wiki class project (in-depth case studies on synthetic biology applied to personal genomics). Integrating knowledge, tools for research, and commercial decision-making concerning new aspects of bioengineering, personalized medicine, genetically modified organisms, and stem cells. Interplays of biophysical, ecological, economic, and social/ethical modeling will be explored through multi-disciplinary teams of students, and individual brief reports.

Potential course projects

H. sapiens 2.0

Earth 2.0

  • Analytic: Bioweather map. Collection and use of real-time assays to track virus outbreaks, etc.
  • Synthetic: Bioenergy. Integrated metabolic, genetic, economic, process, environmental modeling.

Logistics

  • Meeting time: Wednesday, 12:00—1:30 pm
  • First class Thu 1-Feb-2009.
  • Location: Barker Center, Room 316
  • No exams
  • No prerequisites
  • Grading
    • 25% Participation
    • 25% Personal wiki page (weekly assignments)
    • 50% Contribution to group project

Previous Course Links

Recent updates to the course

List of abbreviations:
N
This edit created a new page (also see list of new pages)
m
This is a minor edit
b
This edit was performed by a bot
(±123)
The page size changed by this number of bytes

17 April 2024

     15:34  BioMicroCenter:Element Sequencing‎‎ 3 changes history +295 [Challee‎ (3×)]
     
15:34 (cur | prev) +195 Challee talk contribs
     
14:22 (cur | prev) +100 Challee talk contribs
     
14:07 (cur | prev) 0 Challee talk contribs
     13:10  BioMicroCenter:SingleCell diffhist +30 Noelani Kamelamela talk contribs (→‎10X CHROMIUM X)
     12:43  BioMicroCenter diffhist −15 Noelani Kamelamela talk contribs

16 April 2024

N    19:59  Nanoimprint Lithography (NIL) - Carter Paul‎‎ 10 changes history +7,205 [CarterPaul‎ (10×)]
     
19:59 (cur | prev) +769 CarterPaul talk contribs (→‎Thermal NIL Process)
     
19:53 (cur | prev) 0 CarterPaul talk contribs (→‎Thermal NIL Process)
     
19:53 (cur | prev) 0 CarterPaul talk contribs (→‎Thermal NIL Process)
     
19:52 (cur | prev) +1 CarterPaul talk contribs (→‎Thermal NIL Process)
     
19:50 (cur | prev) +202 CarterPaul talk contribs (→‎Thermal NIL Process)
     
19:17 (cur | prev) −20 CarterPaul talk contribs (→‎References)
     
19:17 (cur | prev) −1 CarterPaul talk contribs
     
19:11 (cur | prev) +4,278 CarterPaul talk contribs
     
18:53 (cur | prev) +1,891 CarterPaul talk contribs
N    
18:42 (cur | prev) +85 CarterPaul talk contribs (Created page with "{{Template:CHEM-ENG590E}} =Motivation= =Introduction to NIL= =Thermal NIL Process=")
     19:40 Upload log CarterPaul talk contribs uploaded File:NIL1.png
N    18:40  3D Cell Culture - McLean Taggart, Emma Villares, Maximillian Marek, Scott LeBlanc, Adam Lyons and Jacob Belden diffhist +24,060 CarterPaul talk contribs (Created page with "{{Template:CHEM-ENG590E}} ==Introduction== While most microfluidic devices incorporate a 2D cell culture design, in which a single layer of cells is grown on the bottom of a device, these systems suffer from poor <i>in vivo</i> mimicry, as, in the human body, most cells grow in all directions.<sup>https://doi.org/10.5114/aoms.2016.63743 1</sup> To address this limitation, 3D cell culture devices have been developed - in w...")
     18:38  CHEM-ENG590E:Wiki Textbook‎‎ 2 changes history +63 [CarterPaul‎ (2×)]
     
18:38 (cur | prev) +50 CarterPaul talk contribs (→‎Chapter 1 - Microfabrication)
     
18:37 (cur | prev) +13 CarterPaul talk contribs
     18:36  3D Cell Culture - McLean Taggart, Emma Villares, Maximillian Marek, Scott LeBlanc, and Adam Lyons diffhist +5,343 CarterPaul talk contribs (Added a Technique and applications section)
     10:20  Yarn Microfluidics - Roger Dirth‎‎ 12 changes history +442 [Rcostello‎ (12×)]
     
10:20 (cur | prev) +41 Rcostello talk contribs (→‎Applications)
     
10:19 (cur | prev) +36 Rcostello talk contribs (→‎Applications)
     
10:18 (cur | prev) +36 Rcostello talk contribs (→‎Introduction)
     
10:17 (cur | prev) +38 Rcostello talk contribs (→‎Fabrication)
     
10:17 (cur | prev) +38 Rcostello talk contribs (→‎Washburn Equation)
     
10:16 (cur | prev) +38 Rcostello talk contribs (→‎Wicking Rate)
     
10:16 (cur | prev) +37 Rcostello talk contribs (→‎Introduction)
     
10:15 (cur | prev) +36 Rcostello talk contribs (→‎Wicking Rate)
     
10:14 (cur | prev) +36 Rcostello talk contribs (→‎Fabrication)
     
10:14 (cur | prev) +34 Rcostello talk contribs (→‎Applications)
     
10:14 (cur | prev) +36 Rcostello talk contribs (→‎Introduction)
     
10:13 (cur | prev) +36 Rcostello talk contribs (→‎Introduction)
     08:18  3D Printed Microfluidic Robots - Helen Hua‎‎ 2 changes history +6 [Michele Caggioni‎ (2×)]
     
08:18 (cur | prev) +22 Michele Caggioni talk contribs (→‎Actuation)
     
08:18 (cur | prev) −16 Michele Caggioni talk contribs (→‎Actuation)
     08:11  3D Printing Overview diffhist +422 Michele Caggioni talk contribs

15 April 2024

     23:43  User:Yanbin Huang‎‎ 2 changes history +170 [Yanbin Huang‎ (2×)]
     
23:43 (cur | prev) 0 Yanbin Huang talk contribs (→‎Granted Patents)
     
23:43 (cur | prev) +170 Yanbin Huang talk contribs (→‎Granted Patents)
     22:11  The paper that launched microfluidics - Xi Ning‎‎ 11 changes history +4,793 [Xning098‎ (11×)]
     
22:11 (cur | prev) −6 Xning098 talk contribs (→‎Summary)
     
22:07 (cur | prev) −12 Xning098 talk contribs (→‎Synthesis)
     
22:06 (cur | prev) 0 Xning098 talk contribs
     
22:06 (cur | prev) +1 Xning098 talk contribs
     
22:05 (cur | prev) 0 Xning098 talk contribs
     
22:03 (cur | prev) +630 Xning098 talk contribs
     
22:01 (cur | prev) +3,189 Xning098 talk contribs
     
21:44 (cur | prev) +688 Xning098 talk contribs (→‎Separation and quantification)
     
21:33 (cur | prev) +306 Xning098 talk contribs
     
21:29 (cur | prev) −2 Xning098 talk contribs (→‎Electrokinetic effect)
     
21:28 (cur | prev) −1 Xning098 talk contribs (→‎Separation and quantification)
     21:45  (Upload log) [Xning098‎ (2×)]
     
21:45 Xning098 talk contribs uploaded File:Figure 4 Tdesign.png
     
21:30 Xning098 talk contribs uploaded File:Figure 3 Set-up3.png