Harvard:Biophysics 101/2009/Infrastructure: Difference between revisions

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* Follow the directions on the front page of the control panel. They will tell you to edit your .ssh/config file by adding:
* Follow the directions on the front page of the control panel. They will tell you to edit your .ssh/config file by adding:


<code>
<nowiki>
Host *.oxf
Host *.oxf
   ProxyCommand ssh -p2222 turnout@switchyard.oxf.freelogy.org -x -a -o "Compression no" $SSH_PROXY_FLAGS %h
   ProxyCommand ssh -p2222 turnout@switchyard.oxf.freelogy.org -x -a -o "Compression no" $SSH_PROXY_FLAGS %h
   User fzembow
   User fzembow
</code>
</nowiki>


* You can now ssh to your node by following the directions on the front page of the contol panel
* You can now ssh to your node by following the directions on the front page of the contol panel


* To set up trait-o-matic, follow the directions at [http://snp-dev2.freelogy.org/docs/install]
* To set up trait-o-matic, follow the directions at [http://snp-dev2.freelogy.org/docs/install]

Revision as of 12:02, 7 November 2009

Infrastructure Background

This is a listing of background information for those interested in Trait-O-Matic

Overview

CodeIgniter Frontend

Database Contents

Revision Control

Joining

  • Acquire a Harvard Ethics Training in Human Research (HETHR) certificate by completing the training at [1]. This should take around 2 hours, you have to read 6 of the required sections and 4 of the "electives". Email your certificate to Sasha (awaitz@post.harvard)
  • Sign up for access to the control panel at [2]
  • Create an RSA ssh public key. This will allow the server to authenticate you. This is done by using the command

ssh-keygen -t rsa

Ensure that your private and public keys are in your .ssh or .openssh directories. Otherwise, ssh will not know where to look for them.

  • Upload your public key to the control panel
  • Follow the directions on the front page of the control panel. They will tell you to edit your .ssh/config file by adding:

Host *.oxf ProxyCommand ssh -p2222 turnout@switchyard.oxf.freelogy.org -x -a -o "Compression no" $SSH_PROXY_FLAGS %h User fzembow

  • You can now ssh to your node by following the directions on the front page of the contol panel
  • To set up trait-o-matic, follow the directions at [3]