Harvard:Biophysics 242r/2011

Course overview

• Graduate level seminar focusing on in-silico design pipelines for nucleic acid- and protein-based molecular machinery and programmable molecular systems. Students are mentored to produce substantial midterm and final group design projects.
• No formal prerequisites. Projects are tailored to each student's strengths and interests.

Example topics for final design project

• Artificial chemotactic swimmers
• Nonequilibrium networks of nano-machines mimicking dynamic instability in the cytoskeleton
• Nucleic acid logic automata responsive to microRNAs in serum
• Self-assembled solar energy harvester based on bio-inorganic nano-antennae for uv-vis
• Systematic debugging of DNA labeling chemistries by atomic-resolution TEM imaging of DNA origami
• Light-controlled transcriptional activation and repression through rational molecular design
• Directed evolution of tissue engineering scaffold nano-materials
• Programmable multistep chemical synthesis by templating on nanostructures
• Ultra-sensitive molecular signal processing for synthetic biology
• Synthetic nanostructure - virus conjugates
• Nano-breadboards for probing electron transport in proteins
• Replication of information in synthetic crystals
• Etc.

Logistics

• Meeting time: 2011 Spring Term, Mondays and Wednesdays, 100 pm — 230 pm, with optional sessions for working on projects from 230 pm to 330 pm, starting on Monday, February 7
• Form teams for midterm projects on Monday, February 7
• Form teams for final projects on Monday, March 21
• First class on Monday, January 24
• Location: CLSB521
• No exams
• Prerequisites: none
• Grading
  • 33% Participation
  • 33% Midterm project
  • 33% Final project
• Harvard course site
• Harvard:Biophysics_242r/2011/Course Development Log
  

Background Info and previous class projects

• http://openwetware.org/wiki/Biophysics_242r/2009

Recent changes

List of abbreviations:

N

This edit created a new page (also see list of new pages)

m

This is a minor edit

b

This edit was performed by a bot

(±123)

The page size changed by this number of bytes

16 April 2024

			10:20		Yarn Microfluidics - Roger Dirth‎‎ 12 changes history +442‎ [Rcostello‎ (12×)]
					10:20 (cur | prev) +41‎ Rcostello talk contribs (→‎Applications)
					10:19 (cur | prev) +36‎ Rcostello talk contribs (→‎Applications)
					10:18 (cur | prev) +36‎ Rcostello talk contribs (→‎Introduction)
					10:17 (cur | prev) +38‎ Rcostello talk contribs (→‎Fabrication)
					10:17 (cur | prev) +38‎ Rcostello talk contribs (→‎Washburn Equation)
					10:16 (cur | prev) +38‎ Rcostello talk contribs (→‎Wicking Rate)
					10:16 (cur | prev) +37‎ Rcostello talk contribs (→‎Introduction)
					10:15 (cur | prev) +36‎ Rcostello talk contribs (→‎Wicking Rate)
					10:14 (cur | prev) +36‎ Rcostello talk contribs (→‎Fabrication)
					10:14 (cur | prev) +34‎ Rcostello talk contribs (→‎Applications)
					10:14 (cur | prev) +36‎ Rcostello talk contribs (→‎Introduction)
					10:13 (cur | prev) +36‎ Rcostello talk contribs (→‎Introduction)

08:11

3D Printing Overview‎ diffhist +422‎ Michele Caggioni talk contribs

15 April 2024

			23:43		User:Yanbin Huang‎‎ 2 changes history +170‎ [Yanbin Huang‎ (2×)]
					23:43 (cur | prev) 0‎ Yanbin Huang talk contribs (→‎Granted Patents)
					23:43 (cur | prev) +170‎ Yanbin Huang talk contribs (→‎Granted Patents)

			22:11		The paper that launched microfluidics - Xi Ning‎‎ 14 changes history +9,705‎ [Xning098‎ (14×)]
					22:11 (cur | prev) −6‎ Xning098 talk contribs (→‎Summary)
					22:07 (cur | prev) −12‎ Xning098 talk contribs (→‎Synthesis)
					22:06 (cur | prev) 0‎ Xning098 talk contribs
					22:06 (cur | prev) +1‎ Xning098 talk contribs
					22:05 (cur | prev) 0‎ Xning098 talk contribs
					22:03 (cur | prev) +630‎ Xning098 talk contribs
					22:01 (cur | prev) +3,189‎ Xning098 talk contribs
					21:44 (cur | prev) +688‎ Xning098 talk contribs (→‎Separation and quantification)
					21:33 (cur | prev) +306‎ Xning098 talk contribs
					21:29 (cur | prev) −2‎ Xning098 talk contribs (→‎Electrokinetic effect)
					21:28 (cur | prev) −1‎ Xning098 talk contribs (→‎Separation and quantification)
					21:27 (cur | prev) +398‎ Xning098 talk contribs (→‎Separation and quantification)
					21:24 (cur | prev) +2,812‎ Xning098 talk contribs
					21:06 (cur | prev) +1,702‎ Xning098 talk contribs

			21:45		(Upload log)‎ [Xning098‎ (4×)]
					21:45 Xning098 talk contribs uploaded File:Figure 4 Tdesign.png ‎
					21:30 Xning098 talk contribs uploaded File:Figure 3 Set-up3.png ‎
					21:24 Xning098 talk contribs uploaded File:Figure 2 Set-up1.png ‎
					21:09 Xning098 talk contribs uploaded File:Figure 1 electroosmotic flow.png ‎

			18:16		Multilayer Paper Microfluidics - Madyson Redder‎‎ 15 changes history +4,948‎ [Mredder‎ (15×)]
					18:16 (cur | prev) +540‎ Mredder talk contribs (→‎Fabrication Methods)
					18:07 (cur | prev) +822‎ Mredder talk contribs (→‎Fabrication Methods)
					17:58 (cur | prev) +1,223‎ Mredder talk contribs (→‎Fabrication Methods)
					17:47 (cur | prev) −47‎ Mredder talk contribs (→‎Motivation for Multilayer Paperfluidics)
					17:46 (cur | prev) +2‎ Mredder talk contribs (→‎Advantages)
					17:46 (cur | prev) +1,094‎ Mredder talk contribs (→‎Advantages)
					17:37 (cur | prev) +24‎ Mredder talk contribs (→‎Materials)
					17:37 (cur | prev) +619‎ Mredder talk contribs (→‎Materials)
					17:19 (cur | prev) +18‎ Mredder talk contribs (→‎Uses)
					17:19 (cur | prev) +7‎ Mredder talk contribs (→‎Uses)
					17:18 (cur | prev) −19‎ Mredder talk contribs (→‎Developing Countries and Travel)
					17:18 (cur | prev) +15‎ Mredder talk contribs (→‎Uses)
					17:16 (cur | prev) 0‎ Mredder talk contribs (→‎Uses)
					17:16 (cur | prev) +1,103‎ Mredder talk contribs (→‎Uses)
					17:14 (cur | prev) −453‎ Mredder talk contribs (→‎Motivation for Multilayer Paperfluidics)