Harvard:Biophysics 242r/2011:Schedule: Difference between revisions
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| align="center" style="background:#f0f0f0; width:100px;"|'''Date''' | | align="center" style="background:#f0f0f0; width:100px;"|'''Date''' | ||
| align="center" style="background:#f0f0f0; width:150px;"|'''Presenter(s)''' | | align="center" style="background:#f0f0f0; width:150px;"|'''Presenter(s)''' | ||
| align="center" style="background:#f0f0f0;"|''' | | align="center" style="background:#f0f0f0;"|'''Topic''' | ||
|- | |- | ||
| Monday, January 24 (Session 1)]||William Shih||Course Overview, midterm projects, biomolecular nano primitives | | Monday, January 24 (Session 1)]||William Shih||Course Overview, midterm projects, biomolecular nano primitives | ||
|- | |- | ||
| Wednesday, January 26 (Session 2)||John Sadowski||<div style="color:green">software demo: nanoEngineer for biomolecular visualization</div> | | Wednesday, January 26 (Session 2)||John Sadowski||<div style="color:green">software demo: nanoEngineer for biomolecular visualization</div> | ||
|- | |- | ||
| Monday, January 31 (Session 3)||William Shih||Origami and large structures | | Monday, January 31 (Session 3)||William Shih||Origami and large structures | ||
|- | |- | ||
| Wednesday, February 2 (Session 4)||William Shih||<div style="color:green">software demo: caDNAno for DNA-origami design</div> | | Wednesday, February 2 (Session 4)||William Shih||<div style="color:green">software demo: caDNAno for DNA-origami design</div> | ||
|- | |- | ||
| Monday, February 7 (Session 5)<br><div style="color:green">Special location: CLSB</div>||Dave Zhang||DNA base-pairing biophysics and informational circuits | | Monday, February 7 (Session 5)<br><div style="color:green">Special location: CLSB</div>||Dave Zhang||DNA base-pairing biophysics and informational circuits | ||
|- | |- | ||
| Wednesday, February 9 (Session 6)||Adam Marblestone||<div style="color:green">software demo: NuPack for sequence analysis and design</div> | | Wednesday, February 9 (Session 6)||Adam Marblestone||<div style="color:green">software demo: NuPack for sequence analysis and design</div> | ||
|- | |- | ||
| Monday, February 14 (Session 7)||Peng Yin||Dynamic DNA nanomachines | | Monday, February 14 (Session 7)||Peng Yin||Dynamic DNA nanomachines | ||
|- | |- | ||
| Wednesday, February 16 (Session 8)||Tom Schaus||<div style="color:green">software demo: Nucleic-acid kinetic simulation</div> | | Wednesday, February 16 (Session 8)||Tom Schaus||<div style="color:green">software demo: Nucleic-acid kinetic simulation</div> | ||
|- | |- | ||
| Monday, February 21 (Session 9)||Peng Yin||Current applications in DNA nanotechnology | | Monday, February 21 (Session 9)||Peng Yin||Current applications in DNA nanotechnology | ||
|- | |- | ||
| Wednesday, February 23 (Session 10)||Vatsan Raman||Computational Protein Design | | Wednesday, February 23 (Session 10)||Vatsan Raman||Computational Protein Design | ||
|- | |- | ||
| Monday, February 28 (Session 11)||Vatsan Raman||<div style="color:green">software demo: FoldIt and Rosetta Protein Design</div> | | Monday, February 28 (Session 11)||Vatsan Raman||<div style="color:green">software demo: FoldIt and Rosetta Protein Design</div> | ||
|- | |- | ||
| Wednesday, March 2 (Session 12)||students||Midterm Presentations I | | Wednesday, March 2 (Session 12)||students||Midterm Presentations I | ||
|- | |- | ||
| Monday, March 7||||Biophysical Society Meeting (no class meeting) | | Monday, March 7||||Biophysical Society Meeting (no class meeting) | ||
|- | |- | ||
| Wednesday, March 9 (Session 13)||students||Midterm Presentations II | | Wednesday, March 9 (Session 13)||students||Midterm Presentations II | ||
|- | |- | ||
| Monday, March 15||||no class meeting (Spring Break) | | Monday, March 15||||no class meeting (Spring Break) | ||
|- | |- | ||
| Wednesday, March 17||||no class meeting (Spring Break) | | Wednesday, March 17||||no class meeting (Spring Break) | ||
|- | |- | ||
| Monday, March 21 (Session 14)||Adam Marblestone||Methods for nanoscale-device characterization | | Monday, March 21 (Session 14)||Adam Marblestone||Methods for nanoscale-device characterization | ||
|- | |- | ||
| Wednesday, March 23 (Session 15)||George Church||Hybrid electronic-biochemical systems | | Wednesday, March 23 (Session 15)||George Church||Hybrid electronic-biochemical systems | ||
|- | |- | ||
| Monday, March 28 (Session 16)||Joanna Aizenberg||Bioinspired actuation systems | | Monday, March 28 (Session 16)||Joanna Aizenberg||Bioinspired actuation systems | ||
|- | |- | ||
| Wednesday, March 30 (Session 17)||Milan Stojanovic||Creepy Spiders | | Wednesday, March 30 (Session 17)||Milan Stojanovic||Creepy Spiders | ||
|- | |- | ||
| Monday, April 4 (Session 18)||Feng Zhang||Engineering DNA-binding proteins: zinc fingers versus Tal | | Monday, April 4 (Session 18)||Feng Zhang||Engineering DNA-binding proteins: zinc fingers versus Tal | ||
|- | |- | ||
| Wednesday, April 6 (Session 19)||Shawn Douglas||<div style="color:green">software demo: caDNAno v2 for DNA-origami design </div> | | Wednesday, April 6 (Session 19)||Shawn Douglas||<div style="color:green">software demo: caDNAno v2 for DNA-origami design </div> | ||
|- | |- | ||
| Monday, April 11 ||||no class meeting (core staff away at FNANO) | | Monday, April 11 ||||no class meeting (core staff away at FNANO) | ||
|- | |- | ||
| Wednesday, April 13 (Session 20)||Neel Joshi||Peptide and protein self-assembly with a focus on rational design of new assembly modes (core staff away at FNANO) | | Wednesday, April 13 (Session 20)||Neel Joshi||Peptide and protein self-assembly with a focus on rational design of new assembly modes (core staff away at FNANO) | ||
|- | |- | ||
| Monday, April 18 (Session 21)||L. Mahadevan||Multistable macromolecular assemblies | | Monday, April 18 (Session 21)||L. Mahadevan||Multistable macromolecular assemblies | ||
|- | |- | ||
| Wednesday, April 20 (Session 22)||George Church||Minimal in vitro replicating systems | | Wednesday, April 20 (Session 22)||George Church||Minimal in vitro replicating systems | ||
|- | |- | ||
| Monday, April 25 (Session 23)||William Shih||Directed molecular evolution | | Monday, April 25 (Session 23)||William Shih||Directed molecular evolution | ||
|- | |- | ||
| Wednesday, April 27 (Session 24)||Peng Yin||Future of biomolecular nanotechnology | | Wednesday, April 27 (Session 24)||Peng Yin||Future of biomolecular nanotechnology | ||
|- | |- | ||
| Monday, May 2 (Session 25)||students||Final Presentations I | | Monday, May 2 (Session 25)||students||Final Presentations I | ||
|- | |- | ||
| Wednesday, May 4 (Session 26)||students||Final Presentations II | | Wednesday, May 4 (Session 26)||students||Final Presentations II | ||
|- | |- | ||
|} | |} | ||
</div> | </div> |
Revision as of 18:09, 20 January 2011
Course meetings are on Mondays and Wednesdays in CLSB521 from 100 pm to 230 pm, with immediately following optional project sessions from 230 pm to 330 pm; these optional sessions will commence on Wednesday, February 2.
Date | Presenter(s) | Topic |
Monday, January 24 (Session 1)] | William Shih | Course Overview, midterm projects, biomolecular nano primitives |
Wednesday, January 26 (Session 2) | John Sadowski | software demo: nanoEngineer for biomolecular visualization
|
Monday, January 31 (Session 3) | William Shih | Origami and large structures |
Wednesday, February 2 (Session 4) | William Shih | software demo: caDNAno for DNA-origami design
|
Monday, February 7 (Session 5) Special location: CLSB |
Dave Zhang | DNA base-pairing biophysics and informational circuits |
Wednesday, February 9 (Session 6) | Adam Marblestone | software demo: NuPack for sequence analysis and design
|
Monday, February 14 (Session 7) | Peng Yin | Dynamic DNA nanomachines |
Wednesday, February 16 (Session 8) | Tom Schaus | software demo: Nucleic-acid kinetic simulation
|
Monday, February 21 (Session 9) | Peng Yin | Current applications in DNA nanotechnology |
Wednesday, February 23 (Session 10) | Vatsan Raman | Computational Protein Design |
Monday, February 28 (Session 11) | Vatsan Raman | software demo: FoldIt and Rosetta Protein Design
|
Wednesday, March 2 (Session 12) | students | Midterm Presentations I |
Monday, March 7 | Biophysical Society Meeting (no class meeting) | |
Wednesday, March 9 (Session 13) | students | Midterm Presentations II |
Monday, March 15 | no class meeting (Spring Break) | |
Wednesday, March 17 | no class meeting (Spring Break) | |
Monday, March 21 (Session 14) | Adam Marblestone | Methods for nanoscale-device characterization |
Wednesday, March 23 (Session 15) | George Church | Hybrid electronic-biochemical systems |
Monday, March 28 (Session 16) | Joanna Aizenberg | Bioinspired actuation systems |
Wednesday, March 30 (Session 17) | Milan Stojanovic | Creepy Spiders |
Monday, April 4 (Session 18) | Feng Zhang | Engineering DNA-binding proteins: zinc fingers versus Tal |
Wednesday, April 6 (Session 19) | Shawn Douglas | software demo: caDNAno v2 for DNA-origami design
|
Monday, April 11 | no class meeting (core staff away at FNANO) | |
Wednesday, April 13 (Session 20) | Neel Joshi | Peptide and protein self-assembly with a focus on rational design of new assembly modes (core staff away at FNANO) |
Monday, April 18 (Session 21) | L. Mahadevan | Multistable macromolecular assemblies |
Wednesday, April 20 (Session 22) | George Church | Minimal in vitro replicating systems |
Monday, April 25 (Session 23) | William Shih | Directed molecular evolution |
Wednesday, April 27 (Session 24) | Peng Yin | Future of biomolecular nanotechnology |
Monday, May 2 (Session 25) | students | Final Presentations I |
Wednesday, May 4 (Session 26) | students | Final Presentations II |