Harvard:Biophysics 242r/2011:Schedule

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| Monday, January 24 (Session 1)]||William Shih||Course Overview, midterm projects, biomolecular nano primitives||
| Monday, January 24 (Session 1)]||William Shih||Course Overview, midterm projects, biomolecular nano primitives||
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| Wednesday, January 26 (Session 2)||John Sadowski||<div style="color:green">software demo: nanoEngineer biomolecular visualization</div> ||
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| Wednesday, January 26 (Session 2)||John Sadowski||<div style="color:green">software demo: nanoEngineer for biomolecular visualization</div> ||
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| Monday, January 31 (Session 3)||William Shih||Origami and large structures||
| Monday, January 31 (Session 3)||William Shih||Origami and large structures||
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| Wednesday, February 2 (Session 4)||William Shih||<div style="color:green">software demo: caDNAno for DNA origami design</div>||
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| Wednesday, February 2 (Session 4)||William Shih||<div style="color:green">software demo: caDNAno for DNA-origami design</div>||
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| Monday, February 7 (Session 5)<br><div style="color:green">Special location: CLSB</div>||Dave Zhang||DNA base-pairing biophysics and informational circuits||
| Monday, February 7 (Session 5)<br><div style="color:green">Special location: CLSB</div>||Dave Zhang||DNA base-pairing biophysics and informational circuits||
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| Monday, April 4 (Session 18)||Feng Zhang||Engineering DNA-binding proteins: zinc fingers versus Tal||
| Monday, April 4 (Session 18)||Feng Zhang||Engineering DNA-binding proteins: zinc fingers versus Tal||
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| Wednesday, April 6 (Session 19)||Shawn Douglas||next generation caDNAno <div style="color:green">software demo</div>||
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| Wednesday, April 6 (Session 19)||Shawn Douglas||<div style="color:green">software demo: caDNAno v2 for DNA-origami design </div>||
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| Monday, April 11 ||||no class meeting (core staff away at FNANO)||
| Monday, April 11 ||||no class meeting (core staff away at FNANO)||

Revision as of 21:07, 20 January 2011

Biophysics 242r/2011

Biologically Inspired Molecular Engineering

Image:DNA_nanostructure_logo_2010-10-23.png

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Course meetings are on Mondays and Wednesdays in CLSB521 from 100 pm to 230 pm, with immediately following optional project sessions from 230 pm to 330 pm; these optional sessions will commence on Wednesday, February 2.

Date Presenter(s) 3Topic
Monday, January 24 (Session 1)]William ShihCourse Overview, midterm projects, biomolecular nano primitives
Wednesday, January 26 (Session 2)John Sadowski
software demo: nanoEngineer for biomolecular visualization
Monday, January 31 (Session 3)William ShihOrigami and large structures
Wednesday, February 2 (Session 4)William Shih
software demo: caDNAno for DNA-origami design
Monday, February 7 (Session 5)
Special location: CLSB
Dave ZhangDNA base-pairing biophysics and informational circuits
Wednesday, February 9 (Session 6)Adam Marblestone
software demo: NuPack for sequence analysis and design
Monday, February 14 (Session 7)Peng YinDynamic DNA nanomachines
Wednesday, February 16 (Session 8)Tom Schaus
software demo: Nucleic-acid kinetic simulation
Monday, February 21 (Session 9)Peng YinCurrent applications in DNA nanotechnology
Wednesday, February 23 (Session 10)Vatsan RamanComputational Protein Design
Monday, February 28 (Session 11)Vatsan Raman
software demo: FoldIt and Rosetta Protein Design
Wednesday, March 2 (Session 12)studentsMidterm Presentations I
Monday, March 7Biophysical Society Meeting (no class meeting)
Wednesday, March 9 (Session 13)studentsMidterm Presentations II
Monday, March 15no class meeting (Spring Break)
Wednesday, March 17no class meeting (Spring Break)
Monday, March 21 (Session 14)Adam MarblestoneMethods for nanoscale-device characterization
Wednesday, March 23 (Session 15)George ChurchHybrid electronic-biochemical systems
Monday, March 28 (Session 16)Joanna AizenbergBioinspired actuation systems
Wednesday, March 30 (Session 17)Milan StojanovicCreepy Spiders
Monday, April 4 (Session 18)Feng ZhangEngineering DNA-binding proteins: zinc fingers versus Tal
Wednesday, April 6 (Session 19)Shawn Douglas
software demo: caDNAno v2 for DNA-origami design
Monday, April 11 no class meeting (core staff away at FNANO)
Wednesday, April 13 (Session 20)Neel JoshiPeptide and protein self-assembly with a focus on rational design of new assembly modes (core staff away at FNANO)
Monday, April 18 (Session 21)L. MahadevanMultistable macromolecular assemblies
Wednesday, April 20 (Session 22)George ChurchMinimal in vitro replicating systems
Monday, April 25 (Session 23)William ShihDirected molecular evolution
Wednesday, April 27 (Session 24)Peng YinFuture of biomolecular nanotechnology
Monday, May 2 (Session 25)studentsFinal Presentations I
Wednesday, May 4 (Session 26)studentsFinal Presentations II
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