Harvard:Biophysics 242r/2011:Schedule

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| Monday, January 31 (Session 3)||William Shih||Origami and large structures
| Monday, January 31 (Session 3)||William Shih||Origami and large structures
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|-
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| <div style="color:red">CANCELLED</div> Wednesday, February 2 (Session 4)||William Shih||<div style="color:green">software demo: caDNAno for DNA-origami design</div>
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| <div style="color:red">CANCELLED</div> Wednesday, February 2||||
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|-
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| Monday, February 7 (Session 5)<br><div style="color:green">Special location: NRB335</div>||Dave Zhang||DNA base-pairing biophysics and informational circuits
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| Monday, February 7 (Session 4)<br><div style="color:green">Special location: NRB335</div>||Dave Zhang||DNA base-pairing biophysics and informational circuits
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|-
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| Wednesday, February 9 (Session 6)||Adam Marblestone||<div style="color:green">software demo: NuPack for sequence analysis and design</div>
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| Wednesday, February 9 (Session 5)||William Shih||<div style="color:green">software demo: caDNAno for DNA-origami design</div>
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|-
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| Monday, February 14 (Session 7)||Peng Yin||Dynamic DNA nanomachines
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| Monday, February 14 (Session 6)||Peng Yin||Dynamic DNA nanomachines
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|-
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| Wednesday, February 16 (Session 8)||Tom Schaus||<div style="color:green">software demo: Nucleic-acid kinetic simulation</div>
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| Wednesday, February 16 (Session 7)||Adam Marblestone||<div style="color:green">software demo: NuPack for sequence analysis and design</div>
|-
|-
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| Monday, February 21 (Session 9)||Peng Yin||Current applications in DNA nanotechnology
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| Monday, February 21 (Session 8)||Peng Yin||Current applications in DNA nanotechnology
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| Wednesday, February 23 (Session 10)||Vatsan Raman||Computational Protein Design
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| Wednesday, February 23 (Session 9)||Vatsan Raman||Computational Protein Design
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|-
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| Monday, February 28 (Session 11)||Vatsan Raman||<div style="color:green">software demo: FoldIt and Rosetta Protein Design</div>
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| Monday, February 28 (Session 10)||Vatsan Raman||<div style="color:green">software demo: FoldIt and Rosetta Protein Design</div>
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|-
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| Wednesday, March 2 (Session 12)||students||Midterm Presentations I
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| Wednesday, March 2 (Session 11)||students||Midterm Presentations I
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|-
| Monday, March 7|||| <div style="color:red">no class meeting (Biophysical Society Meeting)</div>
| Monday, March 7|||| <div style="color:red">no class meeting (Biophysical Society Meeting)</div>
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|-
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| Wednesday, March 9 (Session 13)||students||Midterm Presentations II
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| Wednesday, March 9 (Session 12)||students||Midterm Presentations II
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|-
| Monday, March 15||||<div style="color:red">no class meeting (Spring Break)</div>
| Monday, March 15||||<div style="color:red">no class meeting (Spring Break)</div>
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| Wednesday, March 17||||<div style="color:red">no class meeting (Spring Break)</div>
| Wednesday, March 17||||<div style="color:red">no class meeting (Spring Break)</div>
|-
|-
-
| Monday, March 21 (Session 14)||Adam Marblestone||Methods for nanoscale-device characterization
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| Monday, March 21 (Session 13)||Adam Marblestone||Methods for nanoscale-device characterization
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|-
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| Wednesday, March 23 (Session 15)||<div style="color:red">???</div>||<div style="color:red">???</div>
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| Wednesday, March 23 (Session 14)||Tom Schaus||<div style="color:green">software demo: Nucleic-acid kinetic simulation</div>
|-
|-
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| Monday, March 28 (Session 16)||Joanna Aizenberg||Bioinspired actuation systems
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| Monday, March 28 (Session 15)||Joanna Aizenberg||Bioinspired actuation systems
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|-
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| Wednesday, March 30 (Session 17)||Milan Stojanovic||Creepy Spiders
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| Wednesday, March 30 (Session 16)||Milan Stojanovic||Creepy Spiders
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|-
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| Monday, April 4 (Session 18)||Feng Zhang||Engineering DNA-binding proteins: zinc fingers versus Tal
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| Monday, April 4 (Session 17)||Feng Zhang||Engineering DNA-binding proteins: zinc fingers versus Tal
|-
|-
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| Wednesday, April 6 (Session 19)||Shawn Douglas||<div style="color:green">software demo: caDNAno v2 for DNA-origami design </div>
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| Wednesday, April 6 (Session 18)||Shawn Douglas||<div style="color:green">software demo: caDNAno v2 for DNA-origami design </div>
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|-
| Monday, April 11 ||Neel Joshi||Peptide and protein self-assembly with a focus on rational design of new assembly modes (Note: core staff away at FNANO Meeting)
| Monday, April 11 ||Neel Joshi||Peptide and protein self-assembly with a focus on rational design of new assembly modes (Note: core staff away at FNANO Meeting)
|-
|-
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| Wednesday, April 13 (Session 20)||George Church||Hybrid electronic-biochemical systems
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| Wednesday, April 13 (Session 19)||George Church||Hybrid electronic-biochemical systems
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|-
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| Monday, April 18 (Session 21)||L. Mahadevan||Multistable macromolecular assemblies
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| Monday, April 18 (Session 20)||L. Mahadevan||Multistable macromolecular assemblies
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|-
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| Wednesday, April 20 (Session 22)||George Church||Minimal in vitro replicating systems
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| Wednesday, April 20 (Session 21)||George Church||Minimal in vitro replicating systems
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|-
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| Monday, April 25 (Session 23)||William Shih||Directed molecular evolution
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| Monday, April 25 (Session 22)||William Shih||Directed molecular evolution
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|-
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| Wednesday, April 27 (Session 24)||Peng Yin||Future of biomolecular nanotechnology
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| Wednesday, April 27 (Session 23)||Peng Yin||Future of biomolecular nanotechnology
|-
|-
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| Monday, May 2 (Session 25)||students||Final Presentations I
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| Monday, May 2 (Session 24)||students||Final Presentations I
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|-
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| Wednesday, May 4 (Session 26)||students||Final Presentations II
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| Wednesday, May 4 (Session 25)||students||Final Presentations II
|-
|-
|}
|}
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Revision as of 14:08, 1 February 2011

Biophysics 242r/2011

Biologically Inspired Molecular Engineering

Image:DNA_nanostructure_logo_2010-10-23.png

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Please note: Class is cancelled on Wednesday, February 2 due to the severe winter weather.

Course meetings are on Mondays and Wednesdays in CLSB521 from 100 pm to 230 pm, with immediately following optional project sessions from 230 pm to 330 pm; these optional sessions will commence on Wednesday, February 2.

Date Presenter(s) Topic
Monday, January 24 (Session 1)William ShihCourse Overview, midterm projects, biomolecular nano primitives
Wednesday, January 26 (Session 2)John Sadowski
software demo: nanoEngineer for biomolecular visualization
Monday, January 31 (Session 3)William ShihOrigami and large structures
CANCELLED
Wednesday, February 2
Monday, February 7 (Session 4)
Special location: NRB335
Dave ZhangDNA base-pairing biophysics and informational circuits
Wednesday, February 9 (Session 5)William Shih
software demo: caDNAno for DNA-origami design
Monday, February 14 (Session 6)Peng YinDynamic DNA nanomachines
Wednesday, February 16 (Session 7)Adam Marblestone
software demo: NuPack for sequence analysis and design
Monday, February 21 (Session 8)Peng YinCurrent applications in DNA nanotechnology
Wednesday, February 23 (Session 9)Vatsan RamanComputational Protein Design
Monday, February 28 (Session 10)Vatsan Raman
software demo: FoldIt and Rosetta Protein Design
Wednesday, March 2 (Session 11)studentsMidterm Presentations I
Monday, March 7
no class meeting (Biophysical Society Meeting)
Wednesday, March 9 (Session 12)studentsMidterm Presentations II
Monday, March 15
no class meeting (Spring Break)
Wednesday, March 17
no class meeting (Spring Break)
Monday, March 21 (Session 13)Adam MarblestoneMethods for nanoscale-device characterization
Wednesday, March 23 (Session 14)Tom Schaus
software demo: Nucleic-acid kinetic simulation
Monday, March 28 (Session 15)Joanna AizenbergBioinspired actuation systems
Wednesday, March 30 (Session 16)Milan StojanovicCreepy Spiders
Monday, April 4 (Session 17)Feng ZhangEngineering DNA-binding proteins: zinc fingers versus Tal
Wednesday, April 6 (Session 18)Shawn Douglas
software demo: caDNAno v2 for DNA-origami design
Monday, April 11 Neel JoshiPeptide and protein self-assembly with a focus on rational design of new assembly modes (Note: core staff away at FNANO Meeting)
Wednesday, April 13 (Session 19)George ChurchHybrid electronic-biochemical systems
Monday, April 18 (Session 20)L. MahadevanMultistable macromolecular assemblies
Wednesday, April 20 (Session 21)George ChurchMinimal in vitro replicating systems
Monday, April 25 (Session 22)William ShihDirected molecular evolution
Wednesday, April 27 (Session 23)Peng YinFuture of biomolecular nanotechnology
Monday, May 2 (Session 24)studentsFinal Presentations I
Wednesday, May 4 (Session 25)studentsFinal Presentations II
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