Harvard:Biophysics 242r/2011:Schedule

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| Wednesday, February 16 (Session 7)||Adam Marblestone||<div style="color:green">software demo: NuPack for sequence analysis and design</div>
| Wednesday, February 16 (Session 7)||Adam Marblestone||<div style="color:green">software demo: NuPack for sequence analysis and design</div>
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| Monday, February 21 (Session 8)||||<div style="color:red">no class meeting (President's Day)</div>
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| Monday, February 21||||<div style="color:red">no class meeting (President's Day)</div>
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| Wednesday, February 23 (Session 9)||Vatsan Raman||Computational Protein Design
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| Wednesday, February 23 (Session 8)||Vatsan Raman||Computational Protein Design
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| Monday, February 28 (Session 10)||Vatsan Raman||<div style="color:green">software demo: FoldIt and Rosetta Protein Design</div>
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| Monday, February 28 (Session 9)||Vatsan Raman||<div style="color:green">software demo: FoldIt and Rosetta Protein Design</div>
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| Wednesday, March 2 (Session 11)||students||Midterm Presentations <div style="color:purple">we may start early and end late; stay tuned for updates</div>
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| Wednesday, March 2 (Session 10)||students||Midterm Presentations <div style="color:purple">we may start early and end late; stay tuned for updates</div>
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| Monday, March 7|||| <div style="color:red">no class meeting (Biophysical Society Meeting)</div>
| Monday, March 7|||| <div style="color:red">no class meeting (Biophysical Society Meeting)</div>
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| Wednesday, March 16||||<div style="color:red">no class meeting (Spring Break)</div>
| Wednesday, March 16||||<div style="color:red">no class meeting (Spring Break)</div>
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|-
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| Monday, March 21 (Session 13)||Adam Marblestone||Methods for nanoscale-device characterization
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| Monday, March 21 (Session 11)||Adam Marblestone||Methods for nanoscale-device characterization
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| Wednesday, March 23 (Session 14)||Tom Schaus||<div style="color:green">software demo: Nucleic-acid kinetic simulation</div>
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| Wednesday, March 23 (Session 12)||Tom Schaus||<div style="color:green">software demo: Nucleic-acid kinetic simulation</div>
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| Monday, March 28 (Session 15)||Joanna Aizenberg||Bioinspired actuation systems
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| Monday, March 28 (Session 13)||Joanna Aizenberg||Bioinspired actuation systems
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| Wednesday, March 30 (Session 16)||Milan Stojanovic||Creepy Spiders
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| Wednesday, March 30 (Session 14)||Milan Stojanovic||Creepy Spiders
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| Monday, April 4 (Session 17)||Feng Zhang||Engineering DNA-binding proteins: zinc fingers versus Tal
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| Monday, April 4 (Session 15)||Feng Zhang||Engineering DNA-binding proteins: zinc fingers versus Tal
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| Wednesday, April 6 (Session 18)||Shawn Douglas||<div style="color:green">software demo: caDNAno v2 for DNA-origami design </div>
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| Wednesday, April 6 (Session 16)||Shawn Douglas||<div style="color:green">software demo: caDNAno v2 for DNA-origami design </div>
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| Monday, April 11 ||Neel Joshi||Peptide and protein self-assembly with a focus on rational design of new assembly modes (Note: core staff away at FNANO Meeting)
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| Monday, April 11 (Session 17) ||Neel Joshi||Peptide and protein self-assembly with a focus on rational design of new assembly modes (Note: core staff away at FNANO Meeting)
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| Wednesday, April 13 (Session 19)||George Church||Hybrid electronic-biochemical systems
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| Wednesday, April 13 (Session 18)||George Church||Hybrid electronic-biochemical systems
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| Monday, April 18 (Session 20)||L. Mahadevan||Multistable macromolecular assemblies
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| Monday, April 18 (Session 19)||L. Mahadevan||Multistable macromolecular assemblies
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| Wednesday, April 20 (Session 21)||George Church||Minimal in vitro replicating systems
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| Wednesday, April 20 (Session 20)||George Church||Minimal in vitro replicating systems
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| Monday, April 25 (Session 22)||William Shih||Directed molecular evolution
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| Monday, April 25 (Session 21)||William Shih||Directed molecular evolution
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| Wednesday, April 27 (Session 23)||Peng Yin||Future of biomolecular nanotechnology
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| Wednesday, April 27 (Session 22)||Peng Yin||Future of biomolecular nanotechnology
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| Monday, May 2 (Session 24)||students||Final Presentations I
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| Monday, May 2 (Session 23)||students||Final Presentations I
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| Wednesday, May 4 (Session 25)||students||Final Presentations II
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| Wednesday, May 4 (Session 24)||students||Final Presentations II
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|}
|}
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Revision as of 16:21, 15 February 2011

Biophysics 242r/2011

Biologically Inspired Molecular Engineering

Image:DNA_nanostructure_logo_2010-10-23.png

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Course meetings are on Mondays and Wednesdays in CLSB521 from 100 pm to 230 pm, with immediately following optional project sessions from 230 pm to 330 pm; these optional sessions will commence on Wednesday, February 2.

Date Presenter(s) Topic
Monday, January 24 (Session 1)William ShihCourse Overview, midterm projects, biomolecular nano primitives
Wednesday, January 26 (Session 2)John Sadowski
software demo: nanoEngineer for biomolecular visualization
Monday, January 31 (Session 3)William ShihOrigami and large structures
CANCELLED
Wednesday, February 2
Monday, February 7 (Session 4)
Special location: NRB335
Dave ZhangDNA base-pairing biophysics and informational circuits
Wednesday, February 9 (Session 5)William Shih
software demo: caDNAno for DNA-origami design
Monday, February 14 (Session 6)Peng YinDynamic DNA nanomachines
Wednesday, February 16 (Session 7)Adam Marblestone
software demo: NuPack for sequence analysis and design
Monday, February 21
no class meeting (President's Day)
Wednesday, February 23 (Session 8)Vatsan RamanComputational Protein Design
Monday, February 28 (Session 9)Vatsan Raman
software demo: FoldIt and Rosetta Protein Design
Wednesday, March 2 (Session 10)studentsMidterm Presentations
we may start early and end late; stay tuned for updates
Monday, March 7
no class meeting (Biophysical Society Meeting)
Wednesday, March 9
no class meeting (Biophysical Society Meeting)
Monday, March 14
no class meeting (Spring Break)
Wednesday, March 16
no class meeting (Spring Break)
Monday, March 21 (Session 11)Adam MarblestoneMethods for nanoscale-device characterization
Wednesday, March 23 (Session 12)Tom Schaus
software demo: Nucleic-acid kinetic simulation
Monday, March 28 (Session 13)Joanna AizenbergBioinspired actuation systems
Wednesday, March 30 (Session 14)Milan StojanovicCreepy Spiders
Monday, April 4 (Session 15)Feng ZhangEngineering DNA-binding proteins: zinc fingers versus Tal
Wednesday, April 6 (Session 16)Shawn Douglas
software demo: caDNAno v2 for DNA-origami design
Monday, April 11 (Session 17) Neel JoshiPeptide and protein self-assembly with a focus on rational design of new assembly modes (Note: core staff away at FNANO Meeting)
Wednesday, April 13 (Session 18)George ChurchHybrid electronic-biochemical systems
Monday, April 18 (Session 19)L. MahadevanMultistable macromolecular assemblies
Wednesday, April 20 (Session 20)George ChurchMinimal in vitro replicating systems
Monday, April 25 (Session 21)William ShihDirected molecular evolution
Wednesday, April 27 (Session 22)Peng YinFuture of biomolecular nanotechnology
Monday, May 2 (Session 23)studentsFinal Presentations I
Wednesday, May 4 (Session 24)studentsFinal Presentations II
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