Haynes:LitReviewOct2012: Difference between revisions
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==Journal of Biological Engineering== | ==Journal of Biological Engineering== | ||
# (2012) '''Engineered cell-cell communication via DNA messaging'''. Monica Ortiz, Drew Endy at Stanford (No permanent link yet). Summary: Used bacteriophage M13 gene products to send DNA messages that encoded different messages to F+ bacteria. Could be useful if you could control when the message is sent, like in the presence of some compound. | # (2012) '''Engineered cell-cell communication via DNA messaging'''. Monica Ortiz, Drew Endy at Stanford (No permanent link yet). Summary: Used bacteriophage M13 gene products to send DNA messages that encoded different messages to F+ bacteria. Could be useful if you could control when the message is sent, like in the presence of some compound.<br><br> | ||
#(2012) '''A genetic bistable switch utilizing nonlinear protein degradation'''. Daniel Huang, William Holtz, Michel Maharbiz from Department of Electrical Engineering and Computer Science at Berkeley [http://www.jbioleng.org/content/6/1/9 Link]. Summary: Made a bistable switch where the bistability depends on protein degradation. Used Lon protease which will not interfere with endogenous E. coli that targets a specific degradation tag that will not be targeted by endogenous E. coli proteases (no cross talk). Argue that using protein degradation to flip a switch is better than heat shock and UV because it won't damage the rest of the cell. | |||
# (2012) '''A synthetic biology approach to self-regulatory recombinant protein production in Escherichia coli'''. Martin Dragosits, Daniel Nicklas, Ilias Tagkopoulos from UC Davis Genome Center, University of California, Davis [http://www.jbioleng.org/content/6/1/2 Link]<br><br> | |||
# (2012) '''A genetic bistable switch utilizing nonlinear protein degradation'''. Daniel Huang, William Holtz, Michel Maharbiz from Department of Electrical Engineering and Computer Science at Berkeley [http://www.jbioleng.org/content/6/1/9 Link]. Summary: Made a bistable switch where the bistability depends on protein degradation. Used Lon protease which will not interfere with endogenous E. coli that targets a specific degradation tag that will not be targeted by endogenous E. coli proteases (no cross talk). Argue that using protein degradation to flip a switch is better than heat shock and UV because it won't damage the rest of the cell. | # (2012) '''DeviceEditor visual biological CAD canvas'''. Joanna Chen, Douglas Densmore, Timothy S Ham, Jay D Keasling, Nathan J Hillson from Joint BioEnergy Institute, Emeryville, CA [http://www.jbioleng.org/content/6/1/1 Link]<br><br> | ||
# (2012) '''The Constructor: a web application optimizing cloning strategies based on modules from the registry of standard biological parts'''. Matthijn C Hesselman, Jasper J Koehorst, Thijs Slijkhuis, Floor Hugenholtz, Dorett I Odoni, Mark WJ van Passel from Wageningen University, The Netherlands. Based on an iGEM project. (No permanent link yet)<br><br> | |||
# (2012) '''A synthetic biology approach to self-regulatory recombinant protein production in Escherichia coli'''. Martin Dragosits, Daniel Nicklas, Ilias Tagkopoulos from UC Davis Genome Center, University of California, Davis [http://www.jbioleng.org/content/6/1/2 Link] | |||
# (2012) '''DeviceEditor visual biological CAD canvas'''. Joanna Chen, Douglas Densmore, Timothy S Ham, Jay D Keasling, Nathan J Hillson from Joint BioEnergy Institute, Emeryville, CA [http://www.jbioleng.org/content/6/1/1 Link] | |||
# (2012) '''The Constructor: a web application optimizing cloning strategies based on modules from the registry of standard biological parts'''. Matthijn C Hesselman, Jasper J Koehorst, Thijs Slijkhuis, Floor Hugenholtz, Dorett I Odoni, Mark WJ van Passel from Wageningen University, The Netherlands. Based on an iGEM project. (No permanent link yet) | |||
==Journal of Cell Biology== | ==Journal of Cell Biology== |
Revision as of 08:57, 11 October 2012
Fall 2012, 10/8/12
ACS Synthetic Biology
Example:
- (2011) Engineering a Photoactivated Caspase-7 for Rapid Induction of Apoptosis. Evan Mills, Xi Chen, Elizabeth Pham, Stanley Wong, and Kevin Truong et al. ACS Synthetic Biology 2012 1.3:75-82. Link. Summary: Group from University of Toronto developed protein that causes rapid cell apotosis (cell death) of targeted cells.
Cell
- None
Frontiers in Microbiotechnology
- None
Journal of Biological Engineering
- (2012) Engineered cell-cell communication via DNA messaging. Monica Ortiz, Drew Endy at Stanford (No permanent link yet). Summary: Used bacteriophage M13 gene products to send DNA messages that encoded different messages to F+ bacteria. Could be useful if you could control when the message is sent, like in the presence of some compound.
- (2012) A genetic bistable switch utilizing nonlinear protein degradation. Daniel Huang, William Holtz, Michel Maharbiz from Department of Electrical Engineering and Computer Science at Berkeley Link. Summary: Made a bistable switch where the bistability depends on protein degradation. Used Lon protease which will not interfere with endogenous E. coli that targets a specific degradation tag that will not be targeted by endogenous E. coli proteases (no cross talk). Argue that using protein degradation to flip a switch is better than heat shock and UV because it won't damage the rest of the cell.
- (2012) A synthetic biology approach to self-regulatory recombinant protein production in Escherichia coli. Martin Dragosits, Daniel Nicklas, Ilias Tagkopoulos from UC Davis Genome Center, University of California, Davis Link
- (2012) DeviceEditor visual biological CAD canvas. Joanna Chen, Douglas Densmore, Timothy S Ham, Jay D Keasling, Nathan J Hillson from Joint BioEnergy Institute, Emeryville, CA Link
- (2012) The Constructor: a web application optimizing cloning strategies based on modules from the registry of standard biological parts. Matthijn C Hesselman, Jasper J Koehorst, Thijs Slijkhuis, Floor Hugenholtz, Dorett I Odoni, Mark WJ van Passel from Wageningen University, The Netherlands. Based on an iGEM project. (No permanent link yet)
Journal of Cell Biology
- None
Molecular Biology of the Cell
- None
Molecular and Cellular Biology
- (2012) Activating Transcription Factor 3 Regulates Immune and Metabolic Homeostasis. Jan Rynesa,b, Colin D. Donohoea, Peter Frommoltc, Susanne Brodesserd, Marek Jindrae and Mirka Uhlirovaa. MCB Molecular and Cellular Biology 2012 32.19:3949-3962. Link. Summary: Group studying the loss of Atf3 within Drosophila and how it affects the metabolic, immunity, and other related systems.
Nature
- None
Nature Biotechnology
- None
Nature Molecular Systems Biology
- None
Public Library of Science Biology (PLoS Biology)
- None
Proceedings of the National Academy of Sciences (PNAS)
- None
Science
- None
Miscellaneous Reviews and Media
- None