Haynes Lab:Notebook/David Barclay Undergrad Training/Plasmid Transformation/2013/10/27

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| PDX1 || NM_000209.3 || gaaatccaccaaagctcacg || cgggttccgctgtgtaag || #51, cat.no. 04688481001
| PDX1 || NM_000209.3 || gaaatccaccaaagctcacg || cgggttccgctgtgtaag || #51, cat.no. 04688481001
|-
|-
-
| MAFA || AB086960.1 || agcgagaagtgccaactcc || ttgtacaggtcccgctcttt || #39, cat.no. 04687973001
+
| MAFA || AB086961.1 || ctccagagccaggtggag || gtacaggtcccgctccttg || #10, cat.no. 04685091001
|-
|-
-
| GLP1R || NM_002062.3 || cacttggagctaattaaggtttgc || ccgtccagtctttctgctgt
+
| GLP1R || NM_021332.2 || gatgggctcctctcctatca || agatacacgccttccaccag || #15, cat.no. 04685148001
|-  
|-  
-
| PCSK1 || treated cells || PCSK1
+
| PCSK1 || NM_013628.2 || tggagttgcatataattccaaagtt || agcctcaatggcatcagttac ||  #42, cat.no. 04688015001
|-
|-
-
| IAPP || treated cells || IAPP
+
| IAPP || NM_010491.2 || IAPP || aatgatgtgcatctccaaactg || tggttcagtgccacagagag  ||  #101, cat.no. 04692195001
|-
|-
-
| KCNQ2 || treated cells || KCNQ2
+
| KCNQ2 || NM_010611.2 || KCNQ2 || cacgcctacgtgttcctttta || cccctcagagctcttctcg || #2, cat.no. 04684982001
|-
|-
-
| GAPD || treated cells || GAPD (reference gene)
+
| GAPD || NM_008084.2 || GAPD (reference gene) || agcttgtcatcaacgggaag || tttgatgttagtggggtctcg || #9, cat.no. 04685075001
|}
|}
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Revision as of 06:01, 7 November 2013

Haynes BioBrick Cloning Main project page
Previous entry      

UPLassay

  • This is a test run for RT-PCR training. Using gene targets identified in prior research to pancreas differentiation gene sequences.

Reaction List

REACTION LIST
  Template cDNA Gene Target
Rxn 1: treated cells PDX1
Rxn 2: treated cells MAFA
Rxn 3: treated cells GLP1R
Rxn 4: treated cells PCSK1
Rxn 5: treated cells IAPP
Rxn 6: treated cells KCNQ2
Rxn 7: treated cells GAPD (reference gene)
Rxn 8: untreated cells PDX1
Rxn 9: untreated cells MAFA
Rxn 10: untreated cells GLP1R
Rxn 11: untreated cells PCSK1
Rxn 12: untreated cells IAPP
Rxn 13: untreated cells KCNQ2
Rxn 14: untreated cells GAPD (reference gene)
Rxn 15: no template PDX1
Rxn 16: no template MAFA
Rxn 17: no template GLP1R
Rxn 18: no template PCSK1
Rxn 19: no template IAPP
Rxn 20: no template KCN2Q
Rxn 21: no template GAPD (reference gene)
  • Run 3 Each
  • 45 Reactions Run
  • Using Variation 2

Variation 2
Figure 1

  • Using as Reference, discount gene names on left side

Primers

PRIMERS LISt
  Roche Name Left Primer Right Primer UPL probe
PDX1 NM_000209.3 gaaatccaccaaagctcacg cgggttccgctgtgtaag #51, cat.no. 04688481001
MAFA AB086961.1 ctccagagccaggtggag gtacaggtcccgctccttg #10, cat.no. 04685091001
GLP1R NM_021332.2 gatgggctcctctcctatca agatacacgccttccaccag #15, cat.no. 04685148001
PCSK1 NM_013628.2 tggagttgcatataattccaaagtt agcctcaatggcatcagttac #42, cat.no. 04688015001
IAPP NM_010491.2 IAPP aatgatgtgcatctccaaactg tggttcagtgccacagagag #101, cat.no. 04692195001
KCNQ2 NM_010611.2 KCNQ2 cacgcctacgtgttcctttta cccctcagagctcttctcg #2, cat.no. 04684982001
GAPD NM_008084.2 GAPD (reference gene) agcttgtcatcaacgggaag tttgatgttagtggggtctcg #9, cat.no. 04685075001


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