Haynes Lab:Notebook/Engineering PC-TFs/2012/11/06: Difference between revisions

From OpenWetWare
Jump to navigationJump to search
(5 intermediate revisions by the same user not shown)
Line 12: Line 12:
Assembly 1 contains PCR rxns 1,2, and 3. Assembly 2 contains PCR rxns 4,5.
Assembly 1 contains PCR rxns 1,2, and 3. Assembly 2 contains PCR rxns 4,5.
There is no addition of vector this time.
There is no addition of vector this time.
{|border="1" cellpadding="5" cellspacing="0" align="left"
{|border="1" cellpadding="5" cellspacing="0"  
|-
|-
! scope="col" style="background:#efefef;" |  
! style="background:#efefef;" |  
! scope="col" style="background:#efefef;" | 1
! style="background:#efefef;" | 1
! scope="col" style="background:#efefef;" | 2
! style="background:#efefef;" | 2


|-
|-
Line 28: Line 28:
|}
|}


<br>
<br>
<br>
<br>






{|border="1" cellpadding="5" cellspacing="0" align="left"
{|border="1" cellpadding="5" cellspacing="0"  
|-
|-
! scope="col" style="background:#efefef;" | <i>DNA fragments</i>
! scope="col" style="background:#efefef;" | <i>DNA fragments</i>
Line 71: Line 67:
|5.0 μL
|5.0 μL
|}
|}
<br>
<br><br><br><br>


----
----
Line 82: Line 78:
<br>
<br>


{|border="1" cellpadding="5" cellspacing="0" align="left"
{|border="1" cellpadding="5" cellspacing="0"
|-
|-
| <i>Reagent</i> || 1 ||  2 || 3 || 4
| <i>Reagent</i> || 1 ||  2 || 3 || 4
Line 98: Line 94:
<br>
<br>
<br>
<br>
<br>
 
<br>
Program:
* 95°C, 3 min.
* [95°C, 30 sec; 57°C, 30 sec; 72°C, 30 sec] 30 cycles
* 72°C, 3 min.
* 4°C ∞


<!-- ##### DO NOT edit below this line unless you know what you are doing. ##### -->
<!-- ##### DO NOT edit below this line unless you know what you are doing. ##### -->

Revision as of 16:55, 6 November 2012

Engineering PC-TFs <html><img src="/images/9/94/Report.png" border="0" /></html> Main project page
<html><img src="/images/c/c3/Resultset_previous.png" border="0" /></html>Previous entry<html>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</html>Next entry<html><img src="/images/5/5c/Resultset_next.png" border="0" /></html>

Summary

  • Gibson Assembly
  • Check with PCR

Assembly 1 contains PCR rxns 1,2, and 3. Assembly 2 contains PCR rxns 4,5. There is no addition of vector this time.

1 2
Gibson Rxn mix 15 μL 15 μL
DNA fragments 5 μL 5 μL



DNA fragments 1 2
#1 1.0 μL
#2 1.0 μL
#3 1.0 μL
#4 1.0 μL
#5 1.0 μL
dH2O 2.0 μL 3.0 μL
Total 5.0 μL 5.0 μL






PCR Check

  1. Product 1: outer-most primers for whole assembly
  2. Product 1: Gibson primer pair for hPCD
  3. Product 2: outer-most primers
  4. Product 2: Gibson primer pair for hPCD


Reagent 1 2 3 4
Gibson product 0.5 μL 0.5 0.5 0.5
primer 1 1.0 1.0 1.0 1.0
primer 2 1.0 1.0 1.0 1.0
2x GoTaq PCR mix 14.5 14.5 14.5 14.5
dH2O 12.0 12.0 12.0 12.0



Program:

  • 95°C, 3 min.
  • [95°C, 30 sec; 57°C, 30 sec; 72°C, 30 sec] 30 cycles
  • 72°C, 3 min.
  • 4°C ∞