Haynes Lab:Notebook/Engineering PC-TFs/2013/01/29: Difference between revisions

From OpenWetWare
Jump to navigationJump to search
Line 47: Line 47:
* 4°C, ∞
* 4°C, ∞
|-
|-
| 20 fmol of each DNA part || up to 8.0
| 20 fmol (1 μL) of each DNA part || up to 8.0
|-
|-
| 10x T4 ligase buffer (Promega) || 1.0
| 10x T4 ligase buffer (Promega) || 1.0
Line 59: Line 59:
|   || 10.0 μL
|   || 10.0 μL
|}
|}




Revision as of 00:53, 1 February 2013

Engineering PC-TFs <html><img src="/images/9/94/Report.png" border="0" /></html> Main project page
<html><img src="/images/c/c3/Resultset_previous.png" border="0" /></html>Previous entry<html>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</html>Next entry<html><img src="/images/5/5c/Resultset_next.png" border="0" /></html>

Summary


Digestion/ ligation reaction


  • Dilute the purified PCR product to 20 fmol/μL
  • Measure ng/μL of the purified sample.
  • The volume of purified DNA (x) you will need to dilute in a final volume of 20 μL = 20 μL final volume * 20 fmols/μL * length in bp * 650 fg/fmol ÷ 1,000,000 fg/ng ÷ measured ng/μL
    • Formula: x = length in bp ÷ measured ng/μL * 0.26

Purified PCR Product to 20fmol/μL

Sample μL of Sample μL of dH2O
1. pSB1A3 7.8 12.2
2. hPCD 2.8 17.2
3. BL02 6.4 13.6
4. BL03 5.5 14.5
5. BL04 8.8 11.2
6. fshPCD 2.3 7.7
  • Perform BsmBI/ T4 ligase mediated assembly
  • BsmBI cuts the DNA fragments and creates complementary overhangs.
  • Complementary sticky ends anneal via base pairing.
  • T4 ligase seals gaps in the phosphodiester DNA backbone.
Reagent Vol. Thermal cycling
  • [45°C, 2 min.; 16°C 5 min.] x25
  • 60°C, 10 min.
  • 80°C, 20 min.
  • 4°C, ∞
20 fmol (1 μL) of each DNA part up to 8.0
10x T4 ligase buffer (Promega) 1.0
T4 ligase (NEB) 0.25
BsmBI 0.5
dH2O 0.25
  10.0 μL




Retrieved from "https://openwetware.org/mediawiki/index.php?title=Haynes_Lab:Notebook/Engineering_PC-TFs/2013/01/29&oldid=672345"