Haynes Lab:Notebook/Engineering PC-TFs/2013/10/11: Difference between revisions

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==Summary==
==October 11, 2013==
*  
* Follow steps for gel electrophoresis.
*  Orient top notch of gel electrophoresis apparatus. Place gel tray into larger tray.
*  Fill gel flask with up to 60 ml of TA buffer.
*  Create 1% gel by putting .6 grams of agarose into flask.
*  Microwave agarose solution for 40 seconds
*  Using hot gloves, grab flask out of microwave and swirl flask vigorously. Place back in microwave for 40 more seconds.
*  When flask is taken out of microwave, make sure that the agarose is completed dissolved.
*  Set up wells on gel electrophoresis apparatus. The mold for the first digest is B-10. Use the thick "teeth" and slip in the notches.
*  Add EtBr (ethidium bromide) to the agarose gel. There should be 1 microliter of EtBr per 10ml of agarose gel. Therefore, 6 µL.
*  Pour gel into tray.
*  Wash the agarose gel flask.
* Run gel for 45 min at 100 V. Check gel under UV light.
 
{| {{table}} cellspacing="3" <!-- Digest rxn. table -->
|- valign="top"
| bgcolor=#cfcfcf | '''Reagent'''
| bgcolor=#cfcfcf | '''Volume'''
| rowspan="7" | [[Image:abc12.jpg|250px| CMV Stock digest 10/11/2013]] [[Image:whyohwhy.jpg|250px|CMV Stock Digest 10/11/2013]] <br>30 μL/lane, 1% agarose; [http://openwetware.org/wiki/Image:KAH_Fermentas_GeneRuler_1kbplus.jpg Ladder]
|-
| DNA (plasmid) || 20.0 μL
|-
| XbaI|| 1.0 μL
|-
| PstI|| 1.0 μL
|-
| Green 10x FastDigest buffer || 3.0 μL
|-
| dH<sub>2</sub>O || 5 μL
|-
| &nbsp; || 30 μL --> 37°C/ ~10 min.
|}
 
{|border="1" cellpadding="5" cellspacing="0" align="left"
|-
! scope="col" style="background:#efefef;" | #
! scope="col" style="background:#efefef;" | Sequence
! scope="col" style="background:#efefef;" | ng/µL
|-
|1
|CMV
| -1.17
|-
|2
|CMV
|2.767
|}




Revision as of 20:48, 11 October 2013



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October 11, 2013

  • Follow steps for gel electrophoresis.
  • Orient top notch of gel electrophoresis apparatus. Place gel tray into larger tray.
  • Fill gel flask with up to 60 ml of TA buffer.
  • Create 1% gel by putting .6 grams of agarose into flask.
  • Microwave agarose solution for 40 seconds
  • Using hot gloves, grab flask out of microwave and swirl flask vigorously. Place back in microwave for 40 more seconds.
  • When flask is taken out of microwave, make sure that the agarose is completed dissolved.
  • Set up wells on gel electrophoresis apparatus. The mold for the first digest is B-10. Use the thick "teeth" and slip in the notches.
  • Add EtBr (ethidium bromide) to the agarose gel. There should be 1 microliter of EtBr per 10ml of agarose gel. Therefore, 6 µL.
  • Pour gel into tray.
  • Wash the agarose gel flask.
  • Run gel for 45 min at 100 V. Check gel under UV light.
Reagent Volume CMV Stock digest 10/11/2013 CMV Stock Digest 10/11/2013
30 μL/lane, 1% agarose; Ladder
DNA (plasmid) 20.0 μL
XbaI 1.0 μL
PstI 1.0 μL
Green 10x FastDigest buffer 3.0 μL
dH2O 5 μL
  30 μL --> 37°C/ ~10 min.
# Sequence ng/µL
1 CMV -1.17
2 CMV 2.767



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