Haynes Lab:Notebook/RNA-seq of PcTF Transfected U2OS & SK-N-SH cell lines/2015/01/27: Difference between revisions

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|style="background-color: #EEE"|[[Image:owwnotebook_icon.png|128px]]<span style="font-size:22px;">RNA-seq of PcTF Transfected U2OS & SK-N-SH cell lines</span>
|style="background-color: #EEE"|[[Image:owwnotebook_icon.png|128px]]<span style="font-size:22px;">RNA-seq of PcTF Transfected U2OS & SK-N-SH cell lines</span>
|style="background-color: #F2F2F2" align="center"|<html><img src="/images/9/94/Report.png" border="0" /></html> [[{{#sub:{{FULLPAGENAME}}|0|-11}}|Main project page]]<br />{{#if:{{#lnpreventry:{{FULLPAGENAME}}}}|<html><img src="/images/c/c3/Resultset_previous.png" border="0" /></html>[[{{#lnpreventry:{{FULLPAGENAME}}}}{{!}}Previous entry]]<html>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</html>}}{{#if:{{#lnnextentry:{{FULLPAGENAME}}}}|[[{{#lnnextentry:{{FULLPAGENAME}}}}{{!}}Next entry]]<html><img src="/images/5/5c/Resultset_next.png" border="0" /></html>}}
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==Protocol==
==Protocol==
[http://openwetware.org/wiki/Haynes:ThawingCells example protocol]
[http://openwetware.org/wiki/Haynes:TRIzol_RNeasy RNA mini-prep w/ TRIzol & RNeasy]




<br><br>
<br><br>
==Notes==
==Notes==
Observations, measurements, placeholder info etc. go here.
Observations, measurements, placeholder info etc. go here.
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==Results/Conclusions==
==Results/Conclusions==
Six samples were collected:
Six samples were collected and placed in the -80°C freezer:


<u>U2OS</u>
<u>U2OS</u>

Latest revision as of 00:41, 27 September 2017

RNA-seq of PcTF Transfected U2OS & SK-N-SH cell lines Main project page
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Summary

The U2OS and KAH126/U2OS cultures are on day 5 of their transfections/inductions, respectively, so it's time to harvest for RNA. The U2OS culture is probably done after this, as the remaining wells had very poor transfection efficiencies.



Goals

  • RNA extraction of U2OS & KAH126/U2OS samples



Protocol

RNA mini-prep w/ TRIzol & RNeasy




Notes

Observations, measurements, placeholder info etc. go here.



Results/Conclusions

Six samples were collected and placed in the -80°C freezer:

U2OS

  • Well 1
  • Well 2
  • Well 5 (negative control)


KAH126/U2OS

  • Well 2 (negative control)
  • Well 5
  • Well 6

Also, unrelated to the above samples, but the RNA collected from the previous KAH126/U2OS induction was from wells 1, 2 and 5, rather than 1, 2 and 4. The sample labeled "Well 4" is still a negative control.