Haynes Lab:Notebook/Synthetic Biology and Bioinformatics for Predictable Control of Therapeutic Genes

From OpenWetWare

< Haynes Lab:Notebook(Difference between revisions)
Jump to: navigation, search
(Phase I/2: Bioinformatics)
Current revision (10:01, 3 September 2013) (view source)
Line 1: Line 1:
< [http://openwetware.org/wiki/Haynes_Lab Haynes Lab OWW Home]
{|{{table}} width="800"
{|{{table}} width="800"

Current revision

< Haynes Lab OWW Home

Search this Project

Customize your entry pages

Phase 1/2: Bioinformatics

  • ChIP is available through the Encyclopedia of DNA Elements (ENCODE) and GALAXY serves as a tool for biomedical analysis. Using the two tools I extracted a list of genes with H3K27me3 near the transcription start site (promoter) from cancer cells lines (neuroblastoma, liver carcinoma, and erythroleukemia). I then went on to perform GO (Gene Ontology) Term analysis to formulate predictions on how PcTF may affect cell phenotype and growth.


  • Phase 1 is complete

Recent changes

Personal tools