Hlavacek - Revision history

Wshlavacek: /* Selected Publications */

Wshlavacek — Fri, 07 Dec 2012 02:34:10 GMT

Selected Publications

←Older revision		Revision as of 02:34, 7 December 2012
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	==Selected Publications==		==Selected Publications==
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-	*Maienschein-Cline M, Dinner AR, Hlavacek WS, Mu F (2012) Improved predictions of transcription factor binding sites using physicochemical features of DNA. [http://nar.oxfordjournals.org/ Nucleic Acids Res] [http://nar.oxfordjournals.org/content/early/2012/08/24/nar.gks771.full?keytype=ref&ijkey=uzonNxxOdtYY6JN doi: 10.1093/nar/gks771] PMID 22923524

	*Martin KR, Barua D, Kauffman AL, Westrate LM, Posner RG, Hlavacek WS, MacKeigan JP (2013) Computational model for autophagic vesicle dynamics in single cells. [http://www.landesbioscience.com/journals/autophagy/ Autophagy] '''9''', 74-92. PMID 23196898		*Martin KR, Barua D, Kauffman AL, Westrate LM, Posner RG, Hlavacek WS, MacKeigan JP (2013) Computational model for autophagic vesicle dynamics in single cells. [http://www.landesbioscience.com/journals/autophagy/ Autophagy] '''9''', 74-92. PMID 23196898

-	*Hlavacek WS, ~~Faeder JR, Blinov ML, Posner RG, Hucka M, Fontana W~~ (~~2006~~) ~~Rules for modeling signal-transduction systems~~. [http://~~stke~~.~~sciencemag~~.org/ ~~Science's STKE~~] ~~'''2006''', re6~~. PMID ~~16849649~~	+	*Maienschein-Cline M, Dinner AR, Hlavacek WS, Mu F (2012) Improved predictions of transcription factor binding sites using physicochemical features of DNA. [http://nar.oxfordjournals.org/ Nucleic Acids Res] [http://nar.oxfordjournals.org/content/early/2012/08/24/nar.gks771.full?keytype=ref&ijkey=uzonNxxOdtYY6JN doi: 10.1093/nar/gks771] PMID 22923524

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Wshlavacek: /* Selected Publications */

Wshlavacek — Fri, 07 Dec 2012 02:33:15 GMT

Selected Publications

←Older revision		Revision as of 02:33, 7 December 2012
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	==Selected Publications==		==Selected Publications==

-	*Maienschein-Cline M, Dinner AR, Hlavacek WS, Mu F (2012) Improved predictions of transcription factor binding sites using physicochemical features of DNA. [Nucleic Acids Res] [http://nar.oxfordjournals.org/content/early/2012/08/24/nar.gks771.full?keytype=ref&ijkey=uzonNxxOdtYY6JN doi: 10.1093/nar/gks771]	+	*Maienschein-Cline M, Dinner AR, Hlavacek WS, Mu F (2012) Improved predictions of transcription factor binding sites using physicochemical features of DNA. [http://nar.oxfordjournals.org/ Nucleic Acids Res] [http://nar.oxfordjournals.org/content/early/2012/08/24/nar.gks771.full?keytype=ref&ijkey=uzonNxxOdtYY6JN doi: 10.1093/nar/gks771] PMID 22923524
		+
		+	*Martin KR, Barua D, Kauffman AL, Westrate LM, Posner RG, Hlavacek WS, MacKeigan JP (2013) Computational model for autophagic vesicle dynamics in single cells. [http://www.landesbioscience.com/journals/autophagy/ Autophagy] '''9''', 74-92. PMID 23196898

	*Hlavacek WS, Faeder JR, Blinov ML, Posner RG, Hucka M, Fontana W (2006) Rules for modeling signal-transduction systems. [http://stke.sciencemag.org/ Science's STKE] '''2006''', re6. PMID 16849649		*Hlavacek WS, Faeder JR, Blinov ML, Posner RG, Hucka M, Fontana W (2006) Rules for modeling signal-transduction systems. [http://stke.sciencemag.org/ Science's STKE] '''2006''', re6. PMID 16849649

Wshlavacek: /* Selected Publications */

Wshlavacek — Fri, 07 Dec 2012 02:29:35 GMT

Selected Publications

←Older revision		Revision as of 02:29, 7 December 2012
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	==Selected Publications==		==Selected Publications==

-	*Hlavacek WS, Faeder JR, Blinov ML, Posner RG, Hucka M, Fontana W (2006) Rules for modeling signal-transduction systems. [http://stke.sciencemag.org/ ~~Sci~~ STKE] '''2006''', re6. PMID 16849649	+	*Maienschein-Cline M, Dinner AR, Hlavacek WS, Mu F (2012) Improved predictions of transcription factor binding sites using physicochemical features of DNA. [Nucleic Acids Res] [http://nar.oxfordjournals.org/content/early/2012/08/24/nar.gks771.full?keytype=ref&ijkey=uzonNxxOdtYY6JN doi: 10.1093/nar/gks771]
-	*Wall ME, Hlavacek WS, Savageau MA (2004) Design of gene circuits: lessons from bacteria. [http://www.nature.com/nrg/index.html Nat Rev Genet] '''5''', 34-42 PMID 14708014	+
		+	*Hlavacek WS, Faeder JR, Blinov ML, Posner RG, Hucka M, Fontana W (2006) Rules for modeling signal-transduction systems. [http://stke.sciencemag.org/ Science's STKE] '''2006''', re6. PMID 16849649

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Wshlavacek: /* Research Interests */

Wshlavacek — Fri, 07 Dec 2012 02:27:06 GMT

Research Interests

←Older revision		Revision as of 02:27, 7 December 2012
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	*Biomolecular site dynamics		*Biomolecular site dynamics
	*Cell signaling in immmunity and cancer		*Cell signaling in immmunity and cancer
		+	*Autophagy
	*Computational methods and software tools		*Computational methods and software tools

Wshlavacek: /* Research Interests */

Wshlavacek — Fri, 07 Dec 2012 02:25:48 GMT

Research Interests

←Older revision		Revision as of 02:25, 7 December 2012
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	'''Modeling of cellular regulatory systems'''		'''Modeling of cellular regulatory systems'''

-	*~~Modeling of cell~~ signaling in immmunity and cancer ~~(biomolecular site dynamics)~~	+	*Biomolecular site dynamics
-	*Bioinformatics (protein-DNA recognition)	+	*Cell signaling in immmunity and cancer
-	*Computational methods and software tools ~~for rule-based modeling~~	+	*Computational methods and software tools
		+
		+	'''Bioinformatics'''
		+
		+	*TF binding site prediction

	==Selected Publications==		==Selected Publications==

Wshlavacek: /* Research Interests */

Wshlavacek — Fri, 07 Dec 2012 02:24:15 GMT

Research Interests

←Older revision		Revision as of 02:24, 7 December 2012
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	'''Modeling of cellular regulatory systems'''		'''Modeling of cellular regulatory systems'''

-	*~~Cell~~ signaling in immmunity and cancer	+	*Modeling of cell signaling in immmunity and cancer (biomolecular site dynamics)
-	*~~Genetic regulatory and metabolic networks~~	+	*Bioinformatics (protein-DNA recognition)
	*Computational methods and software tools for rule-based modeling		*Computational methods and software tools for rule-based modeling

Wshlavacek: /* Research Interests */

Wshlavacek — Sat, 09 Apr 2011 01:56:26 GMT

Research Interests

←Older revision		Revision as of 01:56, 9 April 2011
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	*Cell signaling in immmunity and cancer		*Cell signaling in immmunity and cancer
	*Genetic regulatory and metabolic networks		*Genetic regulatory and metabolic networks
-	*Computational methods and software tools	+	*Computational methods and software tools for rule-based modeling

	==Selected Publications==		==Selected Publications==

Wshlavacek: /* Research Interests */

Wshlavacek — Sat, 09 Apr 2011 01:48:35 GMT

Research Interests

←Older revision		Revision as of 01:48, 9 April 2011
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	'''Modeling of cellular regulatory systems'''		'''Modeling of cellular regulatory systems'''

-	*~~Signal transduction~~ in immmunity and cancer	+	*Cell signaling in immmunity and cancer
	*Genetic regulatory and metabolic networks		*Genetic regulatory and metabolic networks
-	*Computational methods and software tools ~~for modeling cellular systems~~	+	*Computational methods and software tools

	==Selected Publications==		==Selected Publications==

Wshlavacek: /* Research Interests */

Wshlavacek — Sat, 09 Apr 2011 01:47:59 GMT

Research Interests

←Older revision		Revision as of 01:47, 9 April 2011
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	==Research Interests==		==Research Interests==

-	'''~~Mathematical modeling~~ of ~~complex biological~~ systems'''	+	'''Modeling of cellular regulatory systems'''

	*Signal transduction in immmunity and cancer		*Signal transduction in immmunity and cancer

Wshlavacek at 03:34, 18 November 2007

Wshlavacek — Sun, 18 Nov 2007 03:34:02 GMT

←Older revision		Revision as of 03:34, 18 November 2007
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	<div style="padding: 10px; width: 720px; border: 5px solid #000000;">		<div style="padding: 10px; width: 720px; border: 5px solid #000000;">
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-	~~<h1>Welcome to the Hlavacek Lab wiki</h1>~~

	==Research Interests==		==Research Interests==