Hlavacek:Publications

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(Selected publications)
(Recent work)
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*Mu F, Unkefer CJ, Unkefer PJ, Hlavacek WS (2011) Prediction of metabolic reactions based on atomic and molecular properties of small-molecule compounds. [http://bioinformatics.oxfordjournals.org/ Bioinformatics]  
*Mu F, Unkefer CJ, Unkefer PJ, Hlavacek WS (2011) Prediction of metabolic reactions based on atomic and molecular properties of small-molecule compounds. [http://bioinformatics.oxfordjournals.org/ Bioinformatics]  
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*Lemons NW, Hu B, Hlavacek WS (2011) Hierarchical graphs for rule-based modeling of biochemical systems. [http://www.biomedcentral.com/bmcbioinformatics BMC Bioinformatics] '''12''':45 PMID 21288338  
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*Lemons NW, Hu B, Hlavacek WS (2011) Hierarchical graphs for rule-based modeling of biochemical systems. [http://www.biomedcentral.com/bmcbioinformatics BMC Bioinformatics] '''12''':45. PMID 21288338  
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*Bauer AL, Hlavacek WS, Unkefer PJ, Mu F (2010) Using sequence-specific chemical and structural properties of DNA to predict transcription factor binding sites. [http://www.ploscompbiol.org PLoS Comput Biol] '''6''':e1001007 PMID 21124945
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*Bauer AL, Hlavacek WS, Unkefer PJ, Mu F (2010) Using sequence-specific chemical and structural properties of DNA to predict transcription factor binding sites. [http://www.ploscompbiol.org PLoS Comput Biol] '''6''':e1001007. PMID 21124945
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*Yang J, Meng X, Hlavacek WS (2010) Rule-based modelling and simulation of biochemical systems with molecular finite automata. [http://scitation.aip.org/IET-SYB IET Syst Biol] '''4''', 453-466 PMID 21073243
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*Yang J, Meng X, Hlavacek WS (2010) Rule-based modelling and simulation of biochemical systems with molecular finite automata. [http://scitation.aip.org/IET-SYB IET Syst Biol] '''4''', 453-466. PMID 21073243
==Selected publications==
==Selected publications==

Revision as of 21:39, 8 April 2011

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Recent work

  • Mu F, Unkefer CJ, Unkefer PJ, Hlavacek WS (2011) Prediction of metabolic reactions based on atomic and molecular properties of small-molecule compounds. Bioinformatics
  • Bauer AL, Hlavacek WS, Unkefer PJ, Mu F (2010) Using sequence-specific chemical and structural properties of DNA to predict transcription factor binding sites. PLoS Comput Biol 6:e1001007. PMID 21124945
  • Yang J, Meng X, Hlavacek WS (2010) Rule-based modelling and simulation of biochemical systems with molecular finite automata. IET Syst Biol 4, 453-466. PMID 21073243

Selected publications

  • Hlavacek WS, Faeder JR, Blinov ML, Perelson AS, Goldstein B (2003) The complexity of complexes in signal transduction. Biotechnol Bioeng 84, 783-794. PMID 14708119
  • Goldstein B, Faeder JR, Hlavacek WS (2004) Mathematical and computational models of immune-receptor signalling. Nat Rev Immunol 4, 445-456. PMID 15173833
  • Blinov ML, Faeder JR, Goldstein B, Hlavacek WS (2004) BioNetGen: software for rule-based modeling of signal transduction based on the interactions of molecular domains. Bioinformatics 20, 3289-3291. PMID 15217809
  • Hlavacek WS, Faeder JR, Blinov ML, Posner RG, Hucka M, Fontana W (2006) Rules for modeling signal-transduction systems. Sci STKE 2006, re6. PMID 16849649
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