Hlavacek:Publications: Difference between revisions

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==Recent work==
==Selected Publications==


*Chylek LA, Wilson BS, Hlavacek WS (2012) Modeling biomolecular site dynamics in immunoreceptor signaling systems. Los Alamos Technical Report LA-UR-12-23058 [[media:LA-UR-12-23058.pdf|pdf]]
*Chylek LA, Akimov V, Dengjel J, Rigbolt KTG, Hu B, Hlavacek WS, Blagoev B (2014) Phosphorylation site dynamics of early T-cell receptor signaling. PLOS ONE 9: e104240. [http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0104240 Full Text]


*Chylek LA, Stites EC, Posner RG, Hlavacek WS (2012) Innovations of the rule-based modeling approach. Los Alamos Technical Report LA-UR-12-10375 [[media:LA-UR-12-10375.pdf|pdf]]
*Chylek LA, Harris LA, Tung CS, Faeder JR, Lopez CF, Hlavacek WS (2014) Rule-based modeling: a computational approach for studying biomolecular site dynamics in cell signaling systems. Wiley Interdiscip. Rev. Syst. Biol. Med. 6: 13-36. [http://onlinelibrary.wiley.com/doi/10.1002/wsbm.1245/abstract Full Text]


*Creamer MS, Stites EC, Aziz M, Cahill JA, Tan CW, Berens ME, Von Hoff DD, Hlavacek WS, Posner RG (2012) Visualization, annotation and simulation of a large rule-based model for ErbB receptor signaling. BMC Syst Biol 6:107 PMID 22913808
*Barua D, Hlavacek WS (2013) Modeling the effect of APC truncation on destruction complex function in colorectal cancer cells. PLOS Comput. Biol. 9: e1003217. [http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1003217 Full Text]
 
*Barua D, Hlavacek WS, Lipniacki T (2012) A computational model for early events in B cell antigen receptor signaling: analysis of the roles of Lyn and Fyn. J Immunol 189:646-658. PMID 22711887
 
==Selected publications==
 
*Hlavacek WS, Faeder JR, Blinov ML, Perelson AS, Goldstein B (2003) The complexity of complexes in signal transduction. [http://onlinelibrary.wiley.com/journal/10.1002/(ISSN)1097-0290 Biotechnol Bioeng] '''84''', 783-794. PMID 14708119
 
*Wall ME, Hlavacek WS, Savageau MA (2004) Design of gene circuits: lessons from bacteria. [http://www.nature.com/nrg/index.html Nat Rev Genet] '''5''', 34-42. PMID 14708014
 
*Goldstein B, Faeder JR, Hlavacek WS (2004) Mathematical and computational models of immune-receptor signalling. [http://www.nature.com/nri/index.html Nat Rev Immunol] '''4''', 445-456. PMID 15173833
 
*Blinov ML, Faeder JR, Goldstein B, Hlavacek WS (2004) BioNetGen: software for rule-based modeling of signal transduction based on the interactions of molecular domains. [http://bioinformatics.oxfordjournals.org/ Bioinformatics] '''20''', 3289-3291. PMID 15217809
 
*Hlavacek WS, Faeder JR, Blinov ML, Posner RG, Hucka M, Fontana W (2006) Rules for modeling signal-transduction systems. [http://stke.sciencemag.org/ Sci STKE] '''2006''', re6. PMID 16849649

Latest revision as of 08:17, 25 August 2014

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Selected Publications

  • Chylek LA, Akimov V, Dengjel J, Rigbolt KTG, Hu B, Hlavacek WS, Blagoev B (2014) Phosphorylation site dynamics of early T-cell receptor signaling. PLOS ONE 9: e104240. Full Text
  • Chylek LA, Harris LA, Tung CS, Faeder JR, Lopez CF, Hlavacek WS (2014) Rule-based modeling: a computational approach for studying biomolecular site dynamics in cell signaling systems. Wiley Interdiscip. Rev. Syst. Biol. Med. 6: 13-36. Full Text
  • Barua D, Hlavacek WS (2013) Modeling the effect of APC truncation on destruction complex function in colorectal cancer cells. PLOS Comput. Biol. 9: e1003217. Full Text
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