Hlavacek:Publications: Difference between revisions
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==Selected publications== | ==Selected publications== | ||
*Hlavacek WS, Faeder JR, Blinov ML, Perelson AS, Goldstein B (2003) The complexity of complexes in signal transduction. [http://onlinelibrary.wiley.com/journal/10.1002/(ISSN)1097-0290 Biotechnol Bioeng] '''84''', 783-794 PMID 14708014 | |||
*Wall ME, Hlavacek WS, Savageau MA (2004) Design of gene circuits: lessons from bacteria. [http://www.nature.com/nrg/index.html Nat Rev Genet] '''5''', 34-42 PMID 14708014 | *Wall ME, Hlavacek WS, Savageau MA (2004) Design of gene circuits: lessons from bacteria. [http://www.nature.com/nrg/index.html Nat Rev Genet] '''5''', 34-42 PMID 14708014 | ||
*Goldstein B, Faeder JR, Hlavacek WS (2004) Mathematical and computational models of immune-receptor signalling. [http://www.nature.com/nri/index.html Nat Rev Immunol] '''4''', 445-456 PMID 15173833 | |||
*Blinov ML, Faeder JR, Goldstein B, Hlavacek WS (2004) BioNetGen: software for rule-based modeling of signal transduction based on the interactions of molecular domains. [http://bioinformatics.oxfordjournals.org/ Bioinformatics] '''20''', 3289-3291 PMID 15217809 | |||
*Hlavacek WS, Faeder JR, Blinov ML, Posner RG, Hucka M, Fontana W (2006) Rules for modeling signal-transduction systems. [http://stke.sciencemag.org/ Sci STKE] '''2006''', re6. PMID 16849649 | *Hlavacek WS, Faeder JR, Blinov ML, Posner RG, Hucka M, Fontana W (2006) Rules for modeling signal-transduction systems. [http://stke.sciencemag.org/ Sci STKE] '''2006''', re6. PMID 16849649 | ||
Revision as of 18:37, 8 April 2011
Recent work
- Mu F, Unkefer CJ, Unkefer PJ, Hlavacek WS (2011) Prediction of metabolic reactions based on atomic and molecular properties of small-molecule compounds. Bioinformatics
- Lemons NW, Hu B, Hlavacek WS (2011) Hierarchical graphs for rule-based modeling of biochemical systems. BMC Bioinformatics 12:45 PMID 21288338
- Bauer AL, Hlavacek WS, Unkefer PJ, Mu F (2010) Using sequence-specific chemical and structural properties of DNA to predict transcription factor binding sites. PLoS Comput Biol 6:e1001007 PMID 21124945
- Yang J, Meng X, Hlavacek WS (2010) Rule-based modelling and simulation of biochemical systems with molecular finite automata. IET Syst Biol 4, 453-466 PMID 21073243
Selected publications
- Hlavacek WS, Faeder JR, Blinov ML, Perelson AS, Goldstein B (2003) The complexity of complexes in signal transduction. Biotechnol Bioeng 84, 783-794 PMID 14708014
- Wall ME, Hlavacek WS, Savageau MA (2004) Design of gene circuits: lessons from bacteria. Nat Rev Genet 5, 34-42 PMID 14708014
- Goldstein B, Faeder JR, Hlavacek WS (2004) Mathematical and computational models of immune-receptor signalling. Nat Rev Immunol 4, 445-456 PMID 15173833
- Blinov ML, Faeder JR, Goldstein B, Hlavacek WS (2004) BioNetGen: software for rule-based modeling of signal transduction based on the interactions of molecular domains. Bioinformatics 20, 3289-3291 PMID 15217809
- Hlavacek WS, Faeder JR, Blinov ML, Posner RG, Hucka M, Fontana W (2006) Rules for modeling signal-transduction systems. Sci STKE 2006, re6. PMID 16849649
