HughesLab:Publications: Difference between revisions
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==Publications== | ==Publications== | ||
*Li, M.D., Ruan, H.B., Hughes, M.E., Lee, J.S., Singh, J.P., Nitabach, M.N., and Yang X. ( | *Li, M.D., Ruan, H.B., Hughes, M.E., Lee, J.S., Singh, J.P., Jones, S.P., Nitabach, M.N., and Yang X. (2013'). [http://www.ncbi.nlm.nih.gov/pubmed/23395176 O-GlcNAc signaling entrains the circadian clock by modulating BMAL1/CLOCK ubiquitination.] '''Cell Metabolism'''. 17(2): 303-310. <br> | ||
*Hughes, M.E., Hong, H.K., Chong, J.L., Indacochea, A.A., Lee, S.S., Han, M., Takahashi, J.S., and Hogenesch, J.B. (2012). [http://www.ncbi.nlm.nih.gov/pubmed/22844252 Brain-specific rescue of Clock reveals system-driven transcriptional rhythms in peripheral tissue.] '''PLoS Genetics'''. 8(7): e1002835.<br> | *Hughes, M.E., Hong, H.K., Chong, J.L., Indacochea, A.A., Lee, S.S., Han, M., Takahashi, J.S., and Hogenesch, J.B. (2012). [http://www.ncbi.nlm.nih.gov/pubmed/22844252 Brain-specific rescue of Clock reveals system-driven transcriptional rhythms in peripheral tissue.] '''PLoS Genetics'''. 8(7): e1002835.<br> | ||
*Hughes, M.E., Grant, G., Pacquin, C., and Nitabach, M. (2012). [http://www.ncbi.nlm.nih.gov/pubmed/22472103 Deep sequencing the circadian transcriptome of Drosophila brain.] '''Genome Research'''. 22: 1266-1281.<br> | *Hughes, M.E., Grant, G., Pacquin, C., and Nitabach, M. (2012). [http://www.ncbi.nlm.nih.gov/pubmed/22472103 Deep sequencing the circadian transcriptome of Drosophila brain.] '''Genome Research'''. 22: 1266-1281.<br> | ||
*Silver, A.C., Arjona, A., Hughes, M.E., Nitabach, M.N., Fikrig, E., (2012). [http://www.ncbi.nlm.nih.gov/pubmed/22019350 Circadian expression of clock genes in mouse macrophages, dendritic cells, and B cells.] '''Brains, Behavior and Immunity'''. 26(3):407-13<br> | *Silver, A.C., Arjona, A., Hughes, M.E., Nitabach, M.N., Fikrig, E., (2012). [http://www.ncbi.nlm.nih.gov/pubmed/22019350 Circadian expression of clock genes in mouse macrophages, dendritic cells, and B cells.] '''Brains, Behavior and Immunity'''. 26(3):407-13<br> | ||
*Miyazaki M., Schroder E., Edelmann S.E., Hughes M.E., Balke C.W., Esser K.A. (2011). [http://www.ncbi.nlm.nih.gov/pubmed/22076133 Age-Associated Disruption of Molecular Clock Expression in Skeletal Muscle of the Spontaneously Hypertensive Rat.] '''PLoS ONE'''. 6(11), e27168.<br> | *Miyazaki M., Schroder E., Edelmann S.E., Hughes M.E., Balke C.W., Esser K.A. (2011). [http://www.ncbi.nlm.nih.gov/pubmed/22076133 Age-Associated Disruption of Molecular Clock Expression in Skeletal Muscle of the Spontaneously Hypertensive Rat.] '''PLoS ONE'''. 6(11), e27168.<br> | ||
*Xu, K., Diangelo, J. R., Hughes, M. E., Hogenesch, J. B., and Sehgal, A. (2011). [http://www.ncbi.nlm.nih.gov/pubmed/21641546 The circadian clock interacts with metabolic physiology to influence reproductive fitness.] '''Cell Metabolism'''. 13, 639-654. | *Xu, K., Diangelo, J. R., Hughes, M. E., Hogenesch, J. B., and Sehgal, A. (2011). [http://www.ncbi.nlm.nih.gov/pubmed/21641546 The circadian clock interacts with metabolic physiology to influence reproductive fitness.] '''Cell Metabolism'''. 13, 639-654. <br> | ||
*Hughes, M. E., Hogenesch, J. B., and Kornacker, K. (2010). [http://www.ncbi.nlm.nih.gov/pubmed/20876817 JTK_CYCLE: an efficient nonparametric algorithm for detecting rhythmic components in genome-scale data sets.] '''Journal of Biological Rhythms'''. 25, 372-380.<br> | *Hughes, M. E., Hogenesch, J. B., and Kornacker, K. (2010). [http://www.ncbi.nlm.nih.gov/pubmed/20876817 JTK_CYCLE: an efficient nonparametric algorithm for detecting rhythmic components in genome-scale data sets.] '''Journal of Biological Rhythms'''. 25, 372-380.<br> | ||
*Hughes, M. E., Peeler, J., and Hogenesch, J. B. (2010). [http://www.ncbi.nlm.nih.gov/pubmed/20944088 Network dynamics to evaluate performance of an academic institution.] '''Science Translational Medicine'''. 2, 53ps49.<br> | *Hughes, M. E., Peeler, J., and Hogenesch, J. B. (2010). [http://www.ncbi.nlm.nih.gov/pubmed/20944088 Network dynamics to evaluate performance of an academic institution.] '''Science Translational Medicine'''. 2, 53ps49.<br> | ||
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*Hughes, M. E., DiTacchio, L., Hayes, K. R., Vollmers, C., Pulivarthy, S., Baggs, J. E., Panda, S., and Hogenesch, J. B. (2009). [http://www.ncbi.nlm.nih.gov/pubmed/19343201 Harmonics of circadian gene transcription in mammals.] '''PLoS Genetics'''. 5, e1000442.<br> | *Hughes, M. E., DiTacchio, L., Hayes, K. R., Vollmers, C., Pulivarthy, S., Baggs, J. E., Panda, S., and Hogenesch, J. B. (2009). [http://www.ncbi.nlm.nih.gov/pubmed/19343201 Harmonics of circadian gene transcription in mammals.] '''PLoS Genetics'''. 5, e1000442.<br> | ||
*Hughes, M., Deharo, L., Pulivarthy, S. R., Gu, J., Hayes, K., Panda, S., and Hogenesch, J. B. (2007). [http://www.ncbi.nlm.nih.gov/pubmed/18419295 High-resolution time course analysis of gene expression from pituitary.] '''Cold Spring Harbor Symposia on Quantitative Biology''' 72, 381-386.<br> | *Hughes, M., Deharo, L., Pulivarthy, S. R., Gu, J., Hayes, K., Panda, S., and Hogenesch, J. B. (2007). [http://www.ncbi.nlm.nih.gov/pubmed/18419295 High-resolution time course analysis of gene expression from pituitary.] '''Cold Spring Harbor Symposia on Quantitative Biology''' 72, 381-386.<br> | ||
*Hughes, M. E., Bortnick, R., Tsubouchi, A., Bäumer, P., Kondo, M., Uemura, T., and Schmucker, D. (2007). [http://www.ncbi.nlm.nih.gov/pubmed/17481395 Homophilic Dscam interactions control complex dendrite morphogenesis.] '''Neuron'''. 54, 417-427. | *Hughes, M. E., Bortnick, R., Tsubouchi, A., Bäumer, P., Kondo, M., Uemura, T., and Schmucker, D. (2007). [http://www.ncbi.nlm.nih.gov/pubmed/17481395 Homophilic Dscam interactions control complex dendrite morphogenesis.] '''Neuron'''. 54, 417-427. <br> | ||
*Kang, Y. J., Kusler, B., Otsuka, M., Hughes, M., Suzuki, N., Suzuki, S., Yeh, W.-C., Akira, S., Han, J., and Jones, P. P. (2007). [http://www.ncbi.nlm.nih.gov/pubmed/17878357 Calcineurin negatively regulates TLR-mediated activation pathways.] '''Journal of Immunology'''. 179, 4598-4607.<br> | *Kang, Y. J., Kusler, B., Otsuka, M., Hughes, M., Suzuki, N., Suzuki, S., Yeh, W.-C., Akira, S., Han, J., and Jones, P. P. (2007). [http://www.ncbi.nlm.nih.gov/pubmed/17878357 Calcineurin negatively regulates TLR-mediated activation pathways.] '''Journal of Immunology'''. 179, 4598-4607.<br> | ||
*Watson, F. L., Püttmann-Holgado, R., Thomas, F., Lamar, D. L., Hughes, M., Kondo, M., Rebel, V. I., and Schmucker, D. (2005). [http://www.ncbi.nlm.nih.gov/pubmed/16109846 Extensive diversity of Ig-superfamily proteins in the immune system of insects.] '''Science'''. 309, 1874-1878. | *Watson, F. L., Püttmann-Holgado, R., Thomas, F., Lamar, D. L., Hughes, M., Kondo, M., Rebel, V. I., and Schmucker, D. (2005). [http://www.ncbi.nlm.nih.gov/pubmed/16109846 Extensive diversity of Ig-superfamily proteins in the immune system of insects.] '''Science'''. 309, 1874-1878. | ||
Revision as of 07:48, 13 February 2013
Home Lab Members Research JTK_Cycle MuscleDB Publications Protocols Academic Analytics Open Positions Contact
Publications
- Li, M.D., Ruan, H.B., Hughes, M.E., Lee, J.S., Singh, J.P., Jones, S.P., Nitabach, M.N., and Yang X. (2013'). O-GlcNAc signaling entrains the circadian clock by modulating BMAL1/CLOCK ubiquitination. Cell Metabolism. 17(2): 303-310.
- Hughes, M.E., Hong, H.K., Chong, J.L., Indacochea, A.A., Lee, S.S., Han, M., Takahashi, J.S., and Hogenesch, J.B. (2012). Brain-specific rescue of Clock reveals system-driven transcriptional rhythms in peripheral tissue. PLoS Genetics. 8(7): e1002835.
- Hughes, M.E., Grant, G., Pacquin, C., and Nitabach, M. (2012). Deep sequencing the circadian transcriptome of Drosophila brain. Genome Research. 22: 1266-1281.
- Silver, A.C., Arjona, A., Hughes, M.E., Nitabach, M.N., Fikrig, E., (2012). Circadian expression of clock genes in mouse macrophages, dendritic cells, and B cells. Brains, Behavior and Immunity. 26(3):407-13
- Miyazaki M., Schroder E., Edelmann S.E., Hughes M.E., Balke C.W., Esser K.A. (2011). Age-Associated Disruption of Molecular Clock Expression in Skeletal Muscle of the Spontaneously Hypertensive Rat. PLoS ONE. 6(11), e27168.
- Xu, K., Diangelo, J. R., Hughes, M. E., Hogenesch, J. B., and Sehgal, A. (2011). The circadian clock interacts with metabolic physiology to influence reproductive fitness. Cell Metabolism. 13, 639-654.
- Hughes, M. E., Hogenesch, J. B., and Kornacker, K. (2010). JTK_CYCLE: an efficient nonparametric algorithm for detecting rhythmic components in genome-scale data sets. Journal of Biological Rhythms. 25, 372-380.
- Hughes, M. E., Peeler, J., and Hogenesch, J. B. (2010). Network dynamics to evaluate performance of an academic institution. Science Translational Medicine. 2, 53ps49.
- Baggs, J. E., Hughes, M. E., and Hogenesch, J. B. (2010). The network as the target. Wiley Interdiscip. Rev. Syst. Biol. Med. 2, 127-133.
- Hughes, M. E., DiTacchio, L., Hayes, K. R., Vollmers, C., Pulivarthy, S., Baggs, J. E., Panda, S., and Hogenesch, J. B. (2009). Harmonics of circadian gene transcription in mammals. PLoS Genetics. 5, e1000442.
- Hughes, M., Deharo, L., Pulivarthy, S. R., Gu, J., Hayes, K., Panda, S., and Hogenesch, J. B. (2007). High-resolution time course analysis of gene expression from pituitary. Cold Spring Harbor Symposia on Quantitative Biology 72, 381-386.
- Hughes, M. E., Bortnick, R., Tsubouchi, A., Bäumer, P., Kondo, M., Uemura, T., and Schmucker, D. (2007). Homophilic Dscam interactions control complex dendrite morphogenesis. Neuron. 54, 417-427.
- Kang, Y. J., Kusler, B., Otsuka, M., Hughes, M., Suzuki, N., Suzuki, S., Yeh, W.-C., Akira, S., Han, J., and Jones, P. P. (2007). Calcineurin negatively regulates TLR-mediated activation pathways. Journal of Immunology. 179, 4598-4607.
- Watson, F. L., Püttmann-Holgado, R., Thomas, F., Lamar, D. L., Hughes, M., Kondo, M., Rebel, V. I., and Schmucker, D. (2005). Extensive diversity of Ig-superfamily proteins in the immune system of insects. Science. 309, 1874-1878.
Hughes Lab
Department of Biology
University of Missouri, St. Louis
(Starting in August, 2013)
