4.14.08: Previous projects
Project |
Wiki |
Presenter
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2007 UCSF
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Wiki |
Unassigned
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2007 Paris
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Wiki |
Doug
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2007 Peking
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Wiki |
Allen
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2007 Caltech
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Wiki |
Unassigned
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2006 MIT
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Wiki |
Robert
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2006 UCSF
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Wiki |
Unassigned
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2006 Berkeley
|
Wiki |
Fei
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2006 UT-Austin
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Wiki |
Victoria
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I'd be willing to also look over USCF if we need to cover all the presentations. - Allem I would also be willing to team up with Allen to present UCSF's 2007 Presentation if it's OK with everyone. - Robert
Background reading
- Elowitz MB and Leibler S. A synthetic oscillatory network of transcriptional regulators. Nature. 2000 Jan 20;403(6767):335-8. DOI:10.1038/35002125 | PubMed ID:10659856 | HubMed [repressilator]
- Gardner TS, Cantor CR, and Collins JJ. Construction of a genetic toggle switch in Escherichia coli. Nature. 2000 Jan 20;403(6767):339-42. DOI:10.1038/35002131 | PubMed ID:10659857 | HubMed [toggle]
- [aisb]
- Fung E, Wong WW, Suen JK, Bulter T, Lee SG, and Liao JC. A synthetic gene-metabolic oscillator. Nature. 2005 May 5;435(7038):118-22. DOI:10.1038/nature03508 | PubMed ID:15875027 | HubMed [metabolator]
- Ro DK, Paradise EM, Ouellet M, Fisher KJ, Newman KL, Ndungu JM, Ho KA, Eachus RA, Ham TS, Kirby J, Chang MC, Withers ST, Shiba Y, Sarpong R, and Keasling JD. Production of the antimalarial drug precursor artemisinic acid in engineered yeast. Nature. 2006 Apr 13;440(7086):940-3. DOI:10.1038/nature04640 | PubMed ID:16612385 | HubMed [artemisinic]
- Anderson JC, Clarke EJ, Arkin AP, and Voigt CA. Environmentally controlled invasion of cancer cells by engineered bacteria. J Mol Biol. 2006 Jan 27;355(4):619-27. DOI:10.1016/j.jmb.2005.10.076 | PubMed ID:16330045 | HubMed [tumor]
- You L, Cox RS 3rd, Weiss R, and Arnold FH. Programmed population control by cell-cell communication and regulated killing. Nature. 2004 Apr 22;428(6985):868-71. DOI:10.1038/nature02491 | PubMed ID:15064770 | HubMed [population]
- Endy D. Foundations for engineering biology. Nature. 2005 Nov 24;438(7067):449-53. DOI:10.1038/nature04342 | PubMed ID:16306983 | HubMed [endy]
- Voigt CA. Genetic parts to program bacteria. Curr Opin Biotechnol. 2006 Oct;17(5):548-57. DOI:10.1016/j.copbio.2006.09.001 | PubMed ID:16978856 | HubMed [voigt]
- Andrianantoandro E, Basu S, Karig DK, and Weiss R. Synthetic biology: new engineering rules for an emerging discipline. Mol Syst Biol. 2006;2:2006.0028. DOI:10.1038/msb4100073 | PubMed ID:16738572 | HubMed [weiss]
All Medline abstracts: PubMed | HubMed
- So I guess that it might be helpful if we keep a running list of interesting ideas that we might randomly come across while thinking about syn. bio. Maybe we can move this to another page when it gets larger.
- Using network motifs? Uri Alon has done some interesting stuff with it. Should we need to use time-delayed releases, might be handy. http://www.nature.com/nrg/journal/v8/n6/pdf/nrg2102.pdf
- Using ribozymes? No idea where this is going or if its valid, but who said that we needed to follow how the cell does it.... Sorry, had David Bartel as biochem prof, so natural thought: http://web.mit.edu/biology/www/facultyareas/facresearch/bartel.html Anyway, perhaps RNAi or one of those unique forms could be used as a branching statement in what seems to be a rather linear DNA programming methodology (or at least from first glance). take this with a grain of salt though, haven't looked into this idea
- Win MN and Smolke CD. A modular and extensible RNA-based gene-regulatory platform for engineering cellular function. Proc Natl Acad Sci U S A. 2007 Sep 4;104(36):14283-8. DOI:10.1073/pnas.0703961104 | PubMed ID:17709748 | HubMed [win]
- An CI, Trinh VB, and Yokobayashi Y. Artificial control of gene expression in mammalian cells by modulating RNA interference through aptamer-small molecule interaction. RNA. 2006 May;12(5):710-6. DOI:10.1261/rna.2299306 | PubMed ID:16606868 | HubMed [an]
All Medline abstracts: PubMed | HubMed
... I'll format this (i.e. learn how to use wiki syntax) later I guess - Allen
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