IGEM:Cambridge/2008/Notebook/Turing Pattern Formation/2008/08/01: Difference between revisions

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-'''Gel'''
-'''Gel'''
Add 5μL of PCR products, 14μL of SDW and 1μL of dye.
-'''Result'''


* Lane1 : HyperladderI
* Lane1 : HyperladderI
Line 34: Line 40:
* Lane9 : I746101 colony 4
* Lane9 : I746101 colony 4


[[Image:photod.gif|300px|center]]
[[Image:photod.gif|250px|center]]
Add 5μL of PCR products, 14μL of SDW and 1μL of dye.
 
 
-'''Result'''


The result is good. Each colony of I746001 is about 1000kb (all the same size), for I746101, the size is good (about 2000kb), except for one single colony for which there is nothing. It could be a problem during the manipulation.
The result is good. Each colony of I746001 is about 1000kb (all the same size), for I746101, the size is good (about 2000kb), except for one single colony for which there is nothing. It could be a problem during the manipulation.

Revision as of 04:09, 5 September 2008



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Wet Work

  • Check biobricks I746001 and I746101


- Single colony PCR

We had 5 single colonies for each biobrick fro; yestrday. We are going to PCR each single colony.

Add 1μL of cells, 7 μL of SDW, 10μL of Phusion Flash master mix, 1μL of VF2 primer and 1μL of VR primer.


-Gel


Add 5μL of PCR products, 14μL of SDW and 1μL of dye.


-Result

  • Lane1 : HyperladderI
  • Lane2 : I746001 colony 1
  • Lane3 : I746001 colony 2
  • Lane4 : I746001 colony 3
  • Lane5 : I746001 colony 4
  • Lane6 : I746101 colony 1
  • Lane7 : I746101 colony 2
  • Lane8 : I746101 colony 3
  • Lane9 : I746101 colony 4

The result is good. Each colony of I746001 is about 1000kb (all the same size), for I746101, the size is good (about 2000kb), except for one single colony for which there is nothing. It could be a problem during the manipulation.


- Check colony 1

We have colony1 for each biobrick> We want to check them>

- Plasmid miniprep

- Digest with EcoRI and SpeI

- Run a gel (for cut plasmid, add 19μL of DNA and 1μL of dye; for uncut plasmids, add 2μL of DNA, 17μL of SDW and 1μL of dye; for PCR product, add 5μL of DNA, 14μL of SDW and 1μL of dye)

- Result : everything is ok except for biobrick I746001, we have only one band

- New double digest for biobrick I746001, new gel : ok!

We are sure to have some good biobricks for agr (I746001 and I746101)


  • Grow received vectors
Vectors AmpR (μg/μL) CmR (μg/μL) KanR (μg/μL)
ECE112 100 0 0
ECE147 50 0 0
ECE149 50 0 0
ECE150 50 0 0
ECE151 50 0 0
ECE153 100 0 0
ECE162 100 0 0
ECE165 100 10 0
ECE166 100 10 0
ECE171 50 0 10
ECE172 100 10 0
ECE176 100 5 0

- Preparation of Agar plates

We have bottles of 200mL.

Type Amp (μL) Cm (μL) Kan (μL)
Amp100 200 0 0
Amp50 100 0 0
Amp100 + Cm10 200 57.1 0
Amp100 + Cm5 200 28.6 0
Amp50 + Kan10 50 0 80


- Preparation of LB tubes

We prepare 10mL of LB in which we add a single colony.


Type Amp (μL) Cm (μL) Kan (μL)
Amp100 10 0 0
Amp50 5 0 0
Amp100 + Cm10 10 2.9 0
Amp100 + Cm5 10 1.4 0
Amp50 + Kan10 5 0 4