IGEM:Cambridge/2008/Notebook/Turing Pattern Formation/2008/09/12

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(RBS screening (single digest))
(RBS screening (single digest))
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==RBS screening (single digest)==
==RBS screening (single digest)==
-
- Plasmid miniprep 6 colonies of RBS S and 6 colonies of RBS W
+
- Plasmid miniprep 6 colonies of RBS S and 6 colonies of RBS W (without endo wash buffer)
- Nanodrop
- Nanodrop
 +
 +
{|class="wikitable" style="text-align:center" border="1"
 +
|-
 +
! product !! concentration (ng/μL) !! 260/280 !! quantity of DNA to add to have about 300ng (μL) !! added SDW for single digest (μL)
 +
|-
 +
| RBS W1 || 57.1 || 1.57 || 6 || 11
 +
|-
 +
| RBS W3 || 54.1 || 1.53 || 6 || 11
 +
|-
 +
| RBS W5 || 15.1 || 1.85 || 17 || 0
 +
|-
 +
| RBS W 7|| 21.8 || 1.66 || 15 || 2
 +
|-
 +
| RBS W9|| 21.8 || 1.78 || 15 || 2
 +
|-
 +
| RBS W11 || 13.8 || 1.73 || 17 || 0
 +
|-
 +
| RBS S2 || 19.5 || 1.7 || 15 || 2
 +
|-
 +
| RBS S4 || 82.13 || 2.57 || 4 || 13
 +
|-
 +
| RBS S6 || 44.7 || 1.64 || 7 || 10
 +
|-
 +
| RBS S8 || 104.0 || 1.48 || 3 || 14
 +
|-
 +
| RBS S10 || 13.1 || 1.82 || 17 || 0
 +
|-
 +
| RBS S11 || 20.1 || 1.73 || 15 || 2
 +
|}
==Check PCR products==
==Check PCR products==

Revision as of 05:23, 16 September 2008



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RBS screening (single digest)

- Plasmid miniprep 6 colonies of RBS S and 6 colonies of RBS W (without endo wash buffer)

- Nanodrop

product concentration (ng/μL) 260/280 quantity of DNA to add to have about 300ng (μL) added SDW for single digest (μL)
RBS W1 57.1 1.57 6 11
RBS W3 54.1 1.53 6 11
RBS W5 15.1 1.85 17 0
RBS W 7 21.8 1.66 15 2
RBS W9 21.8 1.78 15 2
RBS W11 13.8 1.73 17 0
RBS S2 19.5 1.7 15 2
RBS S4 82.13 2.57 4 13
RBS S6 44.7 1.64 7 10
RBS S8 104.0 1.48 3 14
RBS S10 13.1 1.82 17 0
RBS S11 20.1 1.73 15 2

Check PCR products

- Gel (2μL of each product)

  • Lane1 : λ ladder
  • Lane2 : agrA
  • Lane3 : agrB
  • Lane4 : agrC
  • Lane5 : rep
  • Lane6 : pSB4C5 1
  • Lane7 : pSB4C5 2
  • Lane8 : Pxyl
  • Lane9 : Ppac
  • Lane10 : RBS S
  • Lane11 : RBS W
  • Lane12 : HyperladderI


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