IGEM:Groningen/Notebook/iGEM 2011/2011/08/11: Difference between revisions
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== | ==11-8-11== | ||
<br> Plasmid prep of overnight culture PBAD-pSB1C3 colonies 1 and 2 | |||
<br> Measure DNA concentration: 32 ng/microliter | |||
<br> Samples were send for sequencing and glycerol stocks were made | |||
<br> | |||
<br> colony PCR of PBAD-pSB1C3: | |||
<br> Composition master mix: | |||
<br> 10× Taq buffer: 40μl | |||
<br> dNTPs 10mM: 8μl | |||
<br> MgCl2: 24μl | |||
<br> Forward biobrickvector primer: 8μl | |||
<br> Reverse biobrickvector primer: 8μl | |||
<br> Taq polymerase: 2μl | |||
<br> MQ water: 310μl | |||
<br> | |||
<br> PCR conditions: | |||
<br> Pre heated lid: 111°C | |||
<br> Denaturation: 94°C for 10min | |||
<br> Cycle (33×) | |||
<br> Denaturation: 94°C for 30s | |||
<br> Annealing: 60°C for 30s | |||
<br> Extenstion: 72°C for 30s | |||
<br> Final extension: 72°C for 10min | |||
<br> Store infinite at 4°C | |||
<br> Analyse PCR samples on a 1% agarosegel | |||
<br> | |||
<br> dsDNA was digested: | |||
<br> for taRNA fragment: | |||
<br> 5μl dsDNA plasmid | |||
<br> 1μl SacI | |||
<br> 1μl BamHI | |||
<br> 2μl FD buffer | |||
<br> 11μl MQ | |||
<br> | |||
<br> dsDNA was digested: | |||
<br> for crRNA fragment: | |||
<br> 5μl dsDNA plasmid | |||
<br> 1μl BamHI | |||
<br> 1μl SalI | |||
<br> 2μl FD buffer | |||
<br> 11μl MQ | |||
<br> | |||
<br> dsDNA was digested: | |||
<br> for PRM fragment: | |||
<br> 5μl dsDNA plasmid | |||
<br> 1μl SalI | |||
<br> 1μl HindIII | |||
<br> 2μl FD buffer | |||
<br> 11μl MQ | |||
<br> | |||
<br> Isolate from 1% agarose gel with the agarose extraction kit | |||
<br> PCR overnight for taRNA fragment: | |||
<br> 10× pfu+ MgSO4 buffer: 5μl | |||
<br> dNTPs: 1μl | |||
<br> F3: 1μl | |||
<br> R4: 1μl | |||
<br> pfu: 1μl | |||
<br> DNA template: 5μl | |||
<br> 36μl MQ | |||
<br> | |||
<br> PCR conditions: | |||
<br> Pre heated lid: 111°C | |||
<br> Denaturation: 95°C for 3min | |||
<br> Cycle (35×) | |||
<br> Denaturation: 95°C for 30s | |||
<br> Annealing: 53°C for 30s | |||
<br> Extenstion: 72°C for 1min | |||
<br> Final extension: 72°C for 10min | |||
<br> Store infinite at 4°C | |||
<br> | |||
Revision as of 08:23, 11 August 2011
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11-8-11
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