IGEM:Groningen/Notebook/iGEM 2011/2011/08/17: Difference between revisions
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== | ==17-8-11== | ||
<br> | |||
<br> Plasmid prep of taRNA-pSB1A3-DT and RBS-GFP-DT (again) | |||
<br> DNA concentrations were around 30ng/μl. De taRNA-pSB1A3-DT were send for sequencing and glycerol stocks were made. | |||
<br> Plasmidpreps of RBS-GFP-DT and taRNA-pSB1A3-DT (1 and 4) were used for vector | |||
<br> Checked sequencing results PBAD/araC-pSB1C3, were alright!:) | |||
<br> | |||
<br> Digestion: | |||
<br> RBS-GFP-DT | |||
<br> 5μl vector | |||
<br> 1μl EcoRI | |||
<br> 1μl XbaI | |||
<br> 3μl Fast digest buffer | |||
<br> 1μl FastAP | |||
<br> 19μl MQ | |||
<br> | |||
<br> taRNAc1-pSB1A3-DT | |||
<br> 7.5μl vector | |||
<br> 1μl EcoRI | |||
<br> 1μl XbaI | |||
<br> 3μl Fast digest buffer | |||
<br> 1μl FastAP | |||
<br> 16.5μl MQ | |||
<br> | |||
<br> taRNAc1-pSB1A3-DT | |||
<br> 5μl vector | |||
<br> 1μl EcoRI | |||
<br> 1μl XbaI | |||
<br> 3μl Fast digest buffer | |||
<br> 1μl FastAP | |||
<br> 19μl MQ | |||
<br> | |||
<br> PBAD | |||
<br> 5μl insert | |||
<br> 1μl EcoRI | |||
<br> 1μl SpeI | |||
<br> 2μl Fast digest buffer | |||
<br> 11μl MQ | |||
<br> | |||
<br> PhybB | |||
<br> 4μl insert | |||
<br> 1μl EcoRI | |||
<br> 1μl SpeI | |||
<br> 2μl Fast digest buffer | |||
<br> 12μl MQ | |||
<br> | |||
<br> Incubate for 1 hour at 37 degrees | |||
<br> After incubation: DNA clean up with PCR purification kit of Roche | |||
<br> | |||
<br> Ligation: | |||
<br> PBAD/araC-RBS-GFP-DT | |||
<br> 8.5 μl vector | |||
<br> 5.7 μl insert | |||
<br> 1μl T4 DNA ligase | |||
<br> 2μl T4 DNA ligase buffer | |||
<br> 2.8μl MQ | |||
<br> | |||
<br> PhybB-taRNA-pSB1A3-DT | |||
<br> 8.5 μl vector | |||
<br> 6.5 μl insert | |||
<br> 1μl T4 DNA ligase | |||
<br> 2μl T4 DNA ligase buffer | |||
<br> 2μl MQ | |||
<br> | |||
<br> Self ligation control: | |||
<br> 8.5 μl vector | |||
<br> 1μl T4 DNA ligase | |||
<br> 2μl T4 DNA ligase buffer | |||
<br> 8.5μl MQ | |||
<br> | |||
<br> incubate the samples for 40 minutes at room temperature | |||
<br> For transformation: take a sample of the plasmid PhybB-RBS-GFP-DT (5μl of the plasmid) and transform this in TOP10 competent <br> cells in parallel with the other samples. This will be done because of the DH5alpha strain does not grow well in M9 medium for | |||
<br> flow cytometry measurements... | |||
<br> | |||
<br> Transformation: | |||
<br> Add to 40μl competent cells 10μl ligation mixture | |||
<br> Incubate for 30 min on ice | |||
<br> Heat shock: 45s at 42 degrees | |||
<br> Incubate cells on ice for 2 min | |||
<br> Add 1ml LB medium+ 25mM glucose | |||
<br> Incubate cells for 1h/1.5h at 37 degrees | |||
<br> Spin the cells down, resuspend them in 100μl LB medium and plate 90μl and 10μl out on the plates | |||
<br> Put the plates in the stove at 37 degrees overnight | |||
<br> | |||
<br> Also, in the morning, the plate with PhybB-RBS-GFP looked alright, had single colonies, so I let them grow this morning in 30 <br> degrees for induction of the PhybB promotor. After 1 and 3 hours, no fluorescent colonies were seen on the plate. | |||
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17-8-11
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