IGEM:Harvard/2007/Sequences: Difference between revisions
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'''pET with AIDA-1 signal, insertion site, and AIDA-1'''<br> | '''pET with AIDA-1 signal, insertion site, and AIDA-1''' (update 8/24/07)<br> | ||
(pet29b+ vector) (Nde1) - AIDA signal - insertion site with Nhe1 and Sbf1 ( | (pet29b+ vector) (Nde1) - AIDA signal - insertion site with Nhe1 and Sbf1 (compatible with Xba and Pst of normal biobricks) AIDA1 sequence -stop codon - "Not1" (pet29b+vector) | ||
<br> | <br> | ||
(aaggagatata)''CAT '''ATG'' att aaa tta aaa ttt ggt gtt ttt ttt aca gtt tta cta tct tca gca tat gcc tac gca cat gga aca cct ''GCTAGC'' gca gg''C CTGCAG G''ga ctt aatcctacaa aagaaagtgc aggtaatact cttaccgtgt caaattatac tgggacaccg ggaagtgtta tttctcttgg tggtgtgctt gaaggagata attcacttac ggaccgtctg gtggtgaaag gtaatacctc tggtcaaagt gacatcgttt atgtcaatga agatggcagt ggtggtcaga cgagagatgg tattaatatt atttctgtag agggaaattc tgatgcagaa ttctctctga agaaccgcgt agttgccgga gcttatgatt acacactgca gaaaggaaac gagagtggga cagataataa gggatggtat ttaaccagtc atcttcccac atctgatacc cggcaataca gaccggagaa cggaagttat gctaccaata tggcactggc taactcactg ttcctcatgg atttgaatga gcgtaagcaa ttcagggcca tgagtgataa tacacagcct gagtctgcat ccgtgtggat gaagatcact | (aaggagatata)''CAT '''ATG'' att aaa tta aaa ttt ggt gtt ttt ttt aca gtt tta cta tct tca gca tat gcc tac gca cat gga aca cct ''GCTAGC'' gca gg''C CTGCAG G''ga ctt aatcctacaa aagaaagtgc aggtaatact cttaccgtgt caaattatac tgggacaccg ggaagtgtta tttctcttgg tggtgtgctt gaaggagata attcacttac ggaccgtctg gtggtgaaag gtaatacctc tggtcaaagt gacatcgttt atgtcaatga agatggcagt ggtggtcaga cgagagatgg tattaatatt atttctgtag agggaaattc tgatgcagaa ttctctctga agaaccgcgt agttgccgga gcttatgatt acacactgca gaaaggaaac gagagtggga cagataataa gggatggtat ttaaccagtc atcttcccac atctgatacc cggcaataca gaccggagaa cggaagttat gctaccaata tggcactggc taactcactg ttcctcatgg atttgaatga gcgtaagcaa ttcagggcca tgagtgataa tacacagcct gagtctgcat ccgtgtggat gaagatcact ggaggaagaa gctctggtaa gcttaatgac gggcaaaata aaacaacaac caatcagttt atcaatcagc tcggggggga tatttataaa ttccatgctg aacaactggg tgattttacc ttagggatta tgggaggata cgcgaatgca aaaggtaaaa cgataaatta cacgagcaac aaagctgcca gaaacacact ggatggttat tctgtcgggg tatacggtac gtggtatcag aatggggaaa atgcaacagg gctctttgct gaaacttgga tgcaatataa ctggtttaat gcatcagtga aaggtgacgg actggaagaa gaaaaatata atctgaatgg tttaaccgct tctgcaggtg ggggatataa cctgaatgtg cacacatgga catcacctga aggaataaca ggtgaattct ggttgcagcc tcatttgcag gctgtctgga tgggggttac accggataca catcaggagg ataacggaac ggtggtgcag ggagcaggga aaaataatat tcagacaaaa gcaggtattc gtgcatcctg gaaggtgaaa agcaccctgg ataaggatac cgggcgggag ttccgtccgt atatagaggc aaactggatc cataacactc atgaatttgg tgttaaaatg agtgatgaca gccagttgtt gtcaggtagc cgaaatcagg gagagataaa gacaggtatt gaaggggtga ttactcaaaa cttgtcagtg aatggcggag tcgcatatca ggcaggaggt cacgggagca atgccatctc cggagcactg gggataaaat acagcttctg a''' ''GCGGCCGC'' (actcgagcaccacc) | ||
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'''pET with AIDA-1 signal, his tag, and AIDA-1'''<br> | '''pET with AIDA-1 signal, his tag, and AIDA-1''' (update 8/24/07)<br> | ||
(pet29b+ vector) (Nde1) - AIDA signal - insertion site with his tag - AIDA1 sequence - stop codon - "Not1" (pet29b+vector) | (pet29b+ vector) (Nde1) - AIDA signal - insertion site with his tag - AIDA1 sequence - stop codon - "Not1" (pet29b+vector) | ||
<br> | <br> | ||
(aaggagatata)''CAT '''ATG'' att aaa tta aaa ttt ggt gtt ttt ttt aca gtt tta cta tct tca gca tat gcc tac gca cat gga aca cct GCTAGt ''cat cac cac cat cat cac cat cac cac cac'' gctagc gca ggt CTGCAG Gga ctt aatcctacaa aagaaagtgc aggtaatact cttaccgtgt caaattatac tgggacaccg ggaagtgtta tttctcttgg tggtgtgctt gaaggagata attcacttac ggaccgtctg gtggtgaaag gtaatacctc tggtcaaagt gacatcgttt atgtcaatga agatggcagt ggtggtcaga cgagagatgg tattaatatt atttctgtag agggaaattc tgatgcagaa ttctctctga agaaccgcgt agttgccgga gcttatgatt acacactgca gaaaggaaac gagagtggga cagataataa gggatggtat ttaaccagtc atcttcccac atctgatacc cggcaataca gaccggagaa cggaagttat gctaccaata tggcactggc taactcactg ttcctcatgg atttgaatga gcgtaagcaa ttcagggcca tgagtgataa tacacagcct gagtctgcat ccgtgtggat gaagatcact | (aaggagatata)''CAT '''ATG'' att aaa tta aaa ttt ggt gtt ttt ttt aca gtt tta cta tct tca gca tat gcc tac gca cat gga aca cct GCTAGt ''cat cac cac cat cat cac cat cac cac cac'' gctagc gca ggt CTGCAG Gga ctt aatcctacaa aagaaagtgc aggtaatact cttaccgtgt caaattatac tgggacaccg ggaagtgtta tttctcttgg tggtgtgctt gaaggagata attcacttac ggaccgtctg gtggtgaaag gtaatacctc tggtcaaagt gacatcgttt atgtcaatga agatggcagt ggtggtcaga cgagagatgg tattaatatt atttctgtag agggaaattc tgatgcagaa ttctctctga agaaccgcgt agttgccgga gcttatgatt acacactgca gaaaggaaac gagagtggga cagataataa gggatggtat ttaaccagtc atcttcccac atctgatacc cggcaataca gaccggagaa cggaagttat gctaccaata tggcactggc taactcactg ttcctcatgg atttgaatga gcgtaagcaa ttcagggcca tgagtgataa tacacagcct gagtctgcat ccgtgtggat gaagatcact ggaggaagaa gctctggtaa gcttaatgac gggcaaaata aaacaacaac caatcagttt atcaatcagc tcggggggga tatttataaa ttccatgctg aacaactggg tgattttacc ttagggatta tgggaggata cgcgaatgca aaaggtaaaa cgataaatta cacgagcaac aaagctgcca gaaacacact ggatggttat tctgtcgggg tatacggtac gtggtatcag aatggggaaa atgcaacagg gctctttgct gaaacttgga tgcaatataa ctggtttaat gcatcagtga aaggtgacgg actggaagaa gaaaaatata atctgaatgg tttaaccgct tctgcaggtg ggggatataa cctgaatgtg cacacatgga catcacctga aggaataaca ggtgaattct ggttgcagcc tcatttgcag gctgtctgga tgggggttac accggataca catcaggagg ataacggaac ggtggtgcag ggagcaggga aaaataatat tcagacaaaa gcaggtattc gtgcatcctg gaaggtgaaa agcaccctgg ataaggatac cgggcgggag ttccgtccgt atatagaggc aaactggatc cataacactc atgaatttgg tgttaaaatg agtgatgaca gccagttgtt gtcaggtagc cgaaatcagg gagagataaa gacaggtatt gaaggggtga ttactcaaaa cttgtcagtg aatggcggag tcgcatatca ggcaggaggt cacgggagca atgccatctc cggagcactg gggataaaat acagcttctg a''' ''GCGGCCGC'' (actcgagcaccacc) | ||
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'''pET with AIDA-1 signal, strep2 tag, and AIDA-1'''<br> | '''pET with AIDA-1 signal, strep2 tag, and AIDA-1''' (update 8/24/07)<br> | ||
(pet29b+ vector) (Nde1) - AIDA signal - insertion site with strep2 tag - AIDA1 sequence - stop codon - "Not1" (pet29b+vector) | (pet29b+ vector) (Nde1) - AIDA signal - insertion site with strep2 tag - AIDA1 sequence - stop codon - "Not1" (pet29b+vector) | ||
<br> | <br> | ||
(aaggagatata)''CAT '''ATG'' att aaa tta aaa ttt ggt gtt ttt ttt aca gtt tta cta tct tca gca tat gcc tac gca cat gga aca cct GCTAGt ''tgg agc cac ccg cag ttc gaa aag'' gctagc gca ggt CTGCAG Gga ctt aatcctacaa aagaaagtgc aggtaatact cttaccgtgt caaattatac tgggacaccg ggaagtgtta tttctcttgg tggtgtgctt gaaggagata attcacttac ggaccgtctg gtggtgaaag gtaatacctc tggtcaaagt gacatcgttt atgtcaatga agatggcagt ggtggtcaga cgagagatgg tattaatatt atttctgtag agggaaattc tgatgcagaa ttctctctga agaaccgcgt agttgccgga gcttatgatt acacactgca gaaaggaaac gagagtggga cagataataa gggatggtat ttaaccagtc atcttcccac atctgatacc cggcaataca gaccggagaa cggaagttat gctaccaata tggcactggc taactcactg ttcctcatgg atttgaatga gcgtaagcaa ttcagggcca tgagtgataa tacacagcct gagtctgcat ccgtgtggat gaagatcact | (aaggagatata)''CAT '''ATG'' att aaa tta aaa ttt ggt gtt ttt ttt aca gtt tta cta tct tca gca tat gcc tac gca cat gga aca cct GCTAGt ''tgg agc cac ccg cag ttc gaa aag'' gctagc gca ggt CTGCAG Gga ctt aatcctacaa aagaaagtgc aggtaatact cttaccgtgt caaattatac tgggacaccg ggaagtgtta tttctcttgg tggtgtgctt gaaggagata attcacttac ggaccgtctg gtggtgaaag gtaatacctc tggtcaaagt gacatcgttt atgtcaatga agatggcagt ggtggtcaga cgagagatgg tattaatatt atttctgtag agggaaattc tgatgcagaa ttctctctga agaaccgcgt agttgccgga gcttatgatt acacactgca gaaaggaaac gagagtggga cagataataa gggatggtat ttaaccagtc atcttcccac atctgatacc cggcaataca gaccggagaa cggaagttat gctaccaata tggcactggc taactcactg ttcctcatgg atttgaatga gcgtaagcaa ttcagggcca tgagtgataa tacacagcct gagtctgcat ccgtgtggat gaagatcact ggaggaagaa gctctggtaa gcttaatgac gggcaaaata aaacaacaac caatcagttt atcaatcagc tcggggggga tatttataaa ttccatgctg aacaactggg tgattttacc ttagggatta tgggaggata cgcgaatgca aaaggtaaaa cgataaatta cacgagcaac aaagctgcca gaaacacact ggatggttat tctgtcgggg tatacggtac gtggtatcag aatggggaaa atgcaacagg gctctttgct gaaacttgga tgcaatataa ctggtttaat gcatcagtga aaggtgacgg actggaagaa gaaaaatata atctgaatgg tttaaccgct tctgcaggtg ggggatataa cctgaatgtg cacacatgga catcacctga aggaataaca ggtgaattct ggttgcagcc tcatttgcag gctgtctgga tgggggttac accggataca catcaggagg ataacggaac ggtggtgcag ggagcaggga aaaataatat tcagacaaaa gcaggtattc gtgcatcctg gaaggtgaaa agcaccctgg ataaggatac cgggcgggag ttccgtccgt atatagaggc aaactggatc cataacactc atgaatttgg tgttaaaatg agtgatgaca gccagttgtt gtcaggtagc cgaaatcagg gagagataaa gacaggtatt gaaggggtga ttactcaaaa cttgtcagtg aatggcggag tcgcatatca ggcaggaggt cacgggagca atgccatctc cggagcactg gggataaaat acagcttctg a''' ''GCGGCCGC'' (actcgagcaccacc) | ||
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'''Biobricked OmpA with an NheI site at beginning of loop one''' <br> | |||
gggcgaattgggtaccgaattcgcggccgcttctagaatgaaaaagacagctatcgcgattgcagtggcactggctggtttcgctaccgtagcgcaggccgctccgaaagataacacctggtacactggtgctaaactgggctggtcccagtaccatgacactggtttcatcgctagcaatggcccgacccatgaaaaccaactgggcgctggtgcttttggtggttaccaggttaacccgtatgttggctttgaaatgggttacgactggttaggtcgtatgccgtacaaaggcagcgttgaaaacggtgcatacaaagctcagggcgttcaactgaccgctaaactgggttacccaatcactgacgacctggacatctacactcgtctgggtggcatggtatggcgtgcagacactaaatccaacgtttatggtaaaaaccacgacaccggcgtttctccggtcttcgctggcggtgttgagtacgcgatcactcctgaaatcgctacccgtctggaataccagtggaccaacaacatcggtgacgcacacaccatcggcactcgtccggacaacggcatgctgagcctgggtgtttcctaccgtttcggtcagggcgaagcagctccagtagttgctccggctccagctccggcaccggaagtacagaccaagcacttcactctgaagtctgacgttctgttcaacttcaacaaagcaaccctgaaaccggaaggtcaggctgctctggatcagctgtacagccagctgagcaacctggatccgaaagacggttccgtagttgttctgggttacaccgaccgcatcggttctgacgcttacaaccagggtctgtccgagcgccgtgctcagtctgttgttgattacctgatctccaaaggtatcccggcagacaagatctccgcacgtggtatgggcgaatccaacccggttactggcaacacctgtgacaacgtgaaacagcgtgctgcactgatcgactgcctggctccggatcgtcgcgtagagatcgaagttaaaggtatcaaagacgttgtaactcagccgcaggctactagttaaagcggccgctgcagagctccagcttttgttccc3' | |||
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Latest revision as of 08:50, 24 August 2007
OmpA sequence E. coli |EG10669|OmpA: 346 aa - Outer membrane protein 3a (II*;G;d) structural gene
1 - MKKTAIAIAV ALAGFATVAQ AAPKDNTWYT GAKLGWSQYH DTGFINNNGP THENQLGAGA 61 - FGGYQVNPYV GFEMGYDWLG RMPYKGSVEN GAYKAQGVQL TAKLGYPITD DLDIYTRLGG 121 - MVWRADTKSN VYGKNHDTGV SPVFAGGVEY AITPEIATRL EYQWTNNIGD AHTIGTRPDN 181 - GMLSLGVSYR FGQGEAAPVV APAPAPAPEV QTKHFTLKSD VLFNFNKATL KPEGQAALDQ 241 - LYSQLSNLDP KDGSVVVLGY TDRIGSDAYN QGLSERRAQS VVDYLISKGI PADKISARGM 301 - GESNPVTGNT CDNVKQRAAL IDCLAPDRRV EIEVKGIKDV VTQPQA
E. coli |EG10669|ompA: 1041 bp - Outer membrane protein 3a (II*;G;d) structural gene
1 - atg aaa aag aca gct atc gcg att gca gtg 31 - gca ctg gct ggt ttc gct acc gta gcg cag 61 - gcc gct ccg aaa gat aac acc tgg tac act 91 - ggt gct aaa ctg ggc tgg tcc cag tac cat 121 - gac act ggt ttc atc aac aac aat ggc ccg 151 - acc cat gaa aac caa ctg ggc gct ggt gct 181 - ttt ggt ggt tac cag gtt aac ccg tat gtt 211 - ggc ttt gaa atg ggt tac gac tgg tta ggt 241 - cgt atg ccg tac aaa ggc agc gtt gaa aac 271 - ggt gca tac aaa gct cag ggc gtt caa ctg 301 - acc gct aaa ctg ggt tac cca atc act gac 331 - gac ctg gac atc tac act cgt ctg ggt ggc 361 - atg gta tgg cgt gca gac act aaa tcc aac 391 - gtt tat ggt aaa aac cac gac acc ggc gtt 421 - tct ccg gtc ttc gct ggc ggt gtt gag tac 451 - gcg atc act cct gaa atc gct acc cgt ctg 481 - gaa tac cag tgg acc aac aac atc ggt gac 511 - gca cac acc atc ggc act cgt ccg gac aac 541 - ggc atg ctg agc ctg ggt gtt tcc tac cgt 571 - ttc ggt cag ggc gaa gca gct cca gta gtt 601 - gct ccg gct cca gct ccg gca ccg gaa gta 631 - cag acc aag cac ttc act ctg aag tct gac 661 - gtt ctg ttc aac ttc aac aaa gca acc ctg 691 - aaa ccg gaa ggt cag gct gct ctg gat cag 721 - ctg tac agc cag ctg agc aac ctg gat ccg 751 - aaa gac ggt tcc gta gtt gtt ctg ggt tac 781 - acc gac cgc atc ggt tct gac gct tac aac 811 - cag ggt ctg tcc gag cgc cgt gct cag tct 841 - gtt gtt gat tac ctg atc tcc aaa ggt atc 871 - ccg gca gac aag atc tcc gca cgt ggt atg 901 - ggc gaa tcc aac ccg gtt act ggc aac acc 931 - tgt gac aac gtg aaa cag cgt gct gca ctg 961 - atc gac tgc ctg gct ccg gat cgt cgc gta 991 - gag atc gaa gtt aaa ggt atc aaa gac gtt 1021 - gta act cag ccg cag gct taa
E. coli |EG10544|Lpp: 78 aa - Murein lipoprotein structural gene
1 - MKATKLVLGA VILGSTLLAG CSSNAKIDQL SSDVQTLNAK VDQLSNDVNA MRSDVQAAKD 61 - DAARANQRLD NMATKYRK
E. coli |EG10544|lpp: 237 bp - Murein lipoprotein structural gene
1 - atg aaa gct act aaa ctg gta ctg ggc gcg 31 - gta atc ctg ggt tct act ctg ctg gca ggt 61 - tgc tcc agc aac gct aaa atc gat cag ctg 91 - tct tct gac gtt cag act ctg aac gct aaa 121 - gtt gac cag ctg agc aac gac gtg aac gca 151 - atg cgt tcc gac gtt cag gct gct aaa gat 181 - gac gca gct cgt gct aac cag cgt ctg gac 211 - aac atg gct act aaa tac cgc aag taa
MNS20 (Omp-10mer aa random library coding) (BioMod Foundation) (with stop)
5’ gcggctg ggag actagt nnb nnb nnb nnb nnb nnb nnb nnb nnb nnb gctagc tgataa ctgcag cccg 3’
MNS32 (OmpA rand lib 15mer) (BioMod Foundation)
5' gcggctg ggag actagt nnb nnb nnb nnb nnb nnb nnb nnb nnb nnb nnb nnb nnb nnb nnb gctagc tgataa ctgcag cccg 3'
MNS33 (OmpA rand lib 20mer) (BioMod Foundation)
gcggctg ggag actagt nnb nnb nnb nnb nnb nnb nnb nnb nnb nnb nnb nnb nnb nnb nnb nnb nnb nnb nnb nnb gctagc tgataa ctgcag cccg
OmpA1 surface expression construct in Novagen pET29b+ vector (BioMod)
vector (aaggagatatacat) - atg aaa gct act aaa ctg gta ctg ggc gcg
gta atc ctg ggt tct act ctg ctg gca ggt
tgc TCC AGC AAC GCT AAA ATC GAT CAG act aga
aac ccg tat gtt
ggc ttt gaa atg ggt tac gac tgg tta ggt
cgt atg ccg tac aaa ggc agc gtt gaa aac
ggt gca tac aaa gct cag ggc gtt caa ctg
acc gct aaa ctg ggt tac cca atc act gac
gac ctg gac atc tac act cgt ctg ggt ggc
atg gta tgg cgt gca gac act aaa tcc aac
gtt tat ggt aaa aac cac gac acc ggc gtt
tct ccg gtc ttc gct ggc ggt gtt gag tac
gcg atc act cct gaa atc gct acc cgt ctg
gaa tac cag tgg acc aac aac atc ggt gac
gca cac acc atc ggc act cgt ccg gac aac
gctagc tgataa ctgcag aagctt - vector (gcggccgcactc)
OmpA2 surface expression construct in Novagen pET29b+ vector (BioMod)
vector(aaggagatataCAT) - ATG aaa gct act aaa ctg gta ctg ggc gga ata
aac ccg tat gtt
ggc ttt gaa atg ggt tac gac tgg tta ggt
cgt atg ccg tac aaa ggc agc gtt gaa aac
ggt gca tac aaa gct cag ggc gtt caa ctg
acc gct aaa ctg ggt tac cca atc act gac
gac ctg gac atc tac act cgt ctg ggt ggc
atg gta tgg cgt gca gac act aaa tcc aac
gtt tat ggt aaa aac cac gac acc ggc gtt
tct ccg gtc ttc gct ggc ggt gtt gag tac
gcg atc act cct gaa atc gct acc cgt ctg
gaa tac cag tgg acc aac aac atc ggt gac
gca cac acc atc ggc act cgt ccg gac aac gctagc tgataa ctgcag aagctt - vector(gcggccgcactc)
OmpA1 surface expression construct plus histidine tag in Novagen pET29b+ vector (BioMod)
vector (aaggagatatacat) - atg aaa gct act aaa ctg gta ctg ggc gcg
gta atc ctg ggt tct act ctg ctg gca ggt
tgc TCC AGC AAC GCT AAA ATC GAT CAG act aga
aac ccg tat gtt
ggc ttt gaa atg ggt tac gac tgg tta ggt
cgt atg ccg tac aaa ggc agc gtt gaa aac
ggt gca tac aaa gct cag ggc gtt caa ctg
acc gct aaa ctg ggt tac cca atc act gac
gac ctg gac atc tac act cgt ctg ggt ggc
atg gta tgg cgt gca gac act aaa tcc aac
gtt tat ggt aaa aac cac gac acc ggc gtt
tct ccg gtc ttc gct ggc ggt gtt gag tac
gcg atc act cct gaa atc gct acc cgt ctg
gaa tac cag tgg acc aac aac atc ggt gac
gca cac acc atc ggc act cgt ccg gac aac gctagt cat cac cac cat cat cac cat cac cac cac gctagc tgataa ctgcag aagctt - vector (gcggccgcactc)
OmpA2 surface expression construct plus histidine tag in Novagen pET29b+ vector (BioMod)
vector (aaggagatataCAT) - ATG aaa gct act aaa ctg gta ctg ggc gga ata
aac ccg tat gtt
ggc ttt gaa atg ggt tac gac tgg tta ggt
cgt atg ccg tac aaa ggc agc gtt gaa aac
ggt gca tac aaa gct cag ggc gtt caa ctg
acc gct aaa ctg ggt tac cca atc act gac
gac ctg gac atc tac act cgt ctg ggt ggc
atg gta tgg cgt gca gac act aaa tcc aac
gtt tat ggt aaa aac cac gac acc ggc gtt
tct ccg gtc ttc gct ggc ggt gtt gag tac
gcg atc act cct gaa atc gct acc cgt ctg
gaa tac cag tgg acc aac aac atc ggt gac
gca cac acc atc ggc act cgt ccg gac aac gctagt cat cac cac cat cat cac cat cac cac cac gctagc tgataa ctgcag aagctt - vector (gcggccgcactc)
OmpA1 surface expression construct plus strep2 tag in Novagen pET29b+ vector (BioMod)
vector(aaggagatatacat) - atg aaa gct act aaa ctg gta ctg ggc gcg
gta atc ctg ggt tct act ctg ctg gca ggt
tgc TCC AGC AAC GCT AAA ATC GAT CAG act aga
aac ccg tat gtt
ggc ttt gaa atg ggt tac gac tgg tta ggt
cgt atg ccg tac aaa ggc agc gtt gaa aac
ggt gca tac aaa gct cag ggc gtt caa ctg
acc gct aaa ctg ggt tac cca atc act gac
gac ctg gac atc tac act cgt ctg ggt ggc
atg gta tgg cgt gca gac act aaa tcc aac
gtt tat ggt aaa aac cac gac acc ggc gtt
tct ccg gtc ttc gct ggc ggt gtt gag tac
gcg atc act cct gaa atc gct acc cgt ctg
gaa tac cag tgg acc aac aac atc ggt gac
gca cac acc atc ggc act cgt ccg gac aac gctagt tgg agc cac ccg cag ttc gaa aag gctagc tgataa ctgcag aagctt - vector (gcggccgcactc)
OmpA2 surface expression construct plus strep2 tag in Novagen pET29b+ vector (BioMod)
vector(aaggagatataCAT) - ATG aaa gct act aaa ctg gta ctg ggc gga ata
aac ccg tat gtt
ggc ttt gaa atg ggt tac gac tgg tta ggt
cgt atg ccg tac aaa ggc agc gtt gaa aac
ggt gca tac aaa gct cag ggc gtt caa ctg
acc gct aaa ctg ggt tac cca atc act gac
gac ctg gac atc tac act cgt ctg ggt ggc
atg gta tgg cgt gca gac act aaa tcc aac
gtt tat ggt aaa aac cac gac acc ggc gtt
tct ccg gtc ttc gct ggc ggt gtt gag tac
gcg atc act cct gaa atc gct acc cgt ctg
gaa tac cag tgg acc aac aac atc ggt gac
gca cac acc atc ggc act cgt ccg gac aac gctagt tgg agc cac ccg cag ttc gaa aag gctagc tgataa ctgcag aagctt - vector (gcggccgcactc)
OmpA1 surface expression construct plus 15mer random library in Novagen pET29b+ vector (BioMod)
wanted
construct
vector (aaggagatatacat) - atg aaa gct act aaa ctg gta ctg ggc gcg
gta atc ctg ggt tct act ctg ctg gca ggt
tgc TCC AGC AAC GCT AAA ATC GAT CAG act aga
aac ccg tat gtt
ggc ttt gaa atg ggt tac gac tgg tta ggt
cgt atg ccg tac aaa ggc agc gtt gaa aac
ggt gca tac aaa gct cag ggc gtt caa ctg
acc gct aaa ctg ggt tac cca atc act gac
gac ctg gac atc tac act cgt ctg ggt ggc
atg gta tgg cgt gca gac act aaa tcc aac
gtt tat ggt aaa aac cac gac acc ggc gtt
tct ccg gtc ttc gct ggc ggt gtt gag tac
gcg atc act cct gaa atc gct acc cgt ctg
gaa tac cag tgg acc aac aac atc ggt gac
gca cac acc atc ggc act cgt ccg gac aac gctagt nnb nnb nnb nnb nnb nnb nnb nnb nnb nnb nnb nnb nnb nnb nnb gctagc tgataa ctgcag aagctt - vector (gcggccgcactc)
OmpA2 surface expression construct plus 15mer random library in Novagen pET29b+ vector (BioMod)
wanted
construct
vector (aaggagatataCAT) - ATG aaa gct act aaa ctg gta ctg ggc gga ata
aac ccg tat gtt
ggc ttt gaa atg ggt tac gac tgg tta ggt
cgt atg ccg tac aaa ggc agc gtt gaa aac
ggt gca tac aaa gct cag ggc gtt caa ctg
acc gct aaa ctg ggt tac cca atc act gac
gac ctg gac atc tac act cgt ctg ggt ggc
atg gta tgg cgt gca gac act aaa tcc aac
gtt tat ggt aaa aac cac gac acc ggc gtt
tct ccg gtc ttc gct ggc ggt gtt gag tac
gcg atc act cct gaa atc gct acc cgt ctg
gaa tac cag tgg acc aac aac atc ggt gac
gca cac acc atc ggc act cgt ccg gac aac gctagt nnb nnb nnb nnb nnb nnb nnb nnb nnb nnb nnb nnb nnb nnb nnb gctagc tgataa ctgcag aagctt - vector (gcggccgcactc)
OmpA + library Forward Primer (as ordered)
5’ caaa|Nde1| biobrick| 25 bases of OmpA 3’
5’caaaacatatgGAATTCGCGGCCGCtTCTAGAatgaaagctactaaactggtactgg 3’
NOTE: Non-biobrick version to be used
OmpA + 10-mer library Reverse Primer
5’ Xho1| suffix| random library| last 25 bases OmpA ‘3 (reverse complements)
5’ CTCGAGCTGCAGCGGCCGCtttaACTAGTbnnbnnbnnbnnbnnbnnbnnbnnbnnbnnaagcttctgcagttatcagctagcg 3’
OmpA + 15-mer library Reverse Primer
5’ Xho1| suffix| random library| last 25 bases OmpA ‘3 (reverse complements)
5’ CTCGAGCTGCAGCGGCCGCtttaACTAGTbnnbnnbnnbnnbnnbnnbnnbnnbnnbnnbnnbnnbnnbnnbnnaagcttctgcagttatcagctagcg 3’
REVISED OmpA + 20-mer library Reverse Primer
5’ caaa|Xho1|stop|random library| last 25 bases OmpA ‘3 (reverse complements)
5’ caaaCTCGAGttabnnbnnbnnbnnbnnbnnbnnbnnbnnbnnbnnbnnbnnbnnbnnbnnbnnbnnbnnbnnaagcttctgcagttatcagctagcg 3’
pET with AIDA-1 signal, insertion site, and AIDA-1 (update 8/24/07)
(pet29b+ vector) (Nde1) - AIDA signal - insertion site with Nhe1 and Sbf1 (compatible with Xba and Pst of normal biobricks) AIDA1 sequence -stop codon - "Not1" (pet29b+vector)
(aaggagatata)CAT ATG att aaa tta aaa ttt ggt gtt ttt ttt aca gtt tta cta tct tca gca tat gcc tac gca cat gga aca cct GCTAGC gca ggC CTGCAG Gga ctt aatcctacaa aagaaagtgc aggtaatact cttaccgtgt caaattatac tgggacaccg ggaagtgtta tttctcttgg tggtgtgctt gaaggagata attcacttac ggaccgtctg gtggtgaaag gtaatacctc tggtcaaagt gacatcgttt atgtcaatga agatggcagt ggtggtcaga cgagagatgg tattaatatt atttctgtag agggaaattc tgatgcagaa ttctctctga agaaccgcgt agttgccgga gcttatgatt acacactgca gaaaggaaac gagagtggga cagataataa gggatggtat ttaaccagtc atcttcccac atctgatacc cggcaataca gaccggagaa cggaagttat gctaccaata tggcactggc taactcactg ttcctcatgg atttgaatga gcgtaagcaa ttcagggcca tgagtgataa tacacagcct gagtctgcat ccgtgtggat gaagatcact ggaggaagaa gctctggtaa gcttaatgac gggcaaaata aaacaacaac caatcagttt atcaatcagc tcggggggga tatttataaa ttccatgctg aacaactggg tgattttacc ttagggatta tgggaggata cgcgaatgca aaaggtaaaa cgataaatta cacgagcaac aaagctgcca gaaacacact ggatggttat tctgtcgggg tatacggtac gtggtatcag aatggggaaa atgcaacagg gctctttgct gaaacttgga tgcaatataa ctggtttaat gcatcagtga aaggtgacgg actggaagaa gaaaaatata atctgaatgg tttaaccgct tctgcaggtg ggggatataa cctgaatgtg cacacatgga catcacctga aggaataaca ggtgaattct ggttgcagcc tcatttgcag gctgtctgga tgggggttac accggataca catcaggagg ataacggaac ggtggtgcag ggagcaggga aaaataatat tcagacaaaa gcaggtattc gtgcatcctg gaaggtgaaa agcaccctgg ataaggatac cgggcgggag ttccgtccgt atatagaggc aaactggatc cataacactc atgaatttgg tgttaaaatg agtgatgaca gccagttgtt gtcaggtagc cgaaatcagg gagagataaa gacaggtatt gaaggggtga ttactcaaaa cttgtcagtg aatggcggag tcgcatatca ggcaggaggt cacgggagca atgccatctc cggagcactg gggataaaat acagcttctg a GCGGCCGC (actcgagcaccacc)
pET with AIDA-1 signal, his tag, and AIDA-1 (update 8/24/07)
(pet29b+ vector) (Nde1) - AIDA signal - insertion site with his tag - AIDA1 sequence - stop codon - "Not1" (pet29b+vector)
(aaggagatata)CAT ATG att aaa tta aaa ttt ggt gtt ttt ttt aca gtt tta cta tct tca gca tat gcc tac gca cat gga aca cct GCTAGt cat cac cac cat cat cac cat cac cac cac gctagc gca ggt CTGCAG Gga ctt aatcctacaa aagaaagtgc aggtaatact cttaccgtgt caaattatac tgggacaccg ggaagtgtta tttctcttgg tggtgtgctt gaaggagata attcacttac ggaccgtctg gtggtgaaag gtaatacctc tggtcaaagt gacatcgttt atgtcaatga agatggcagt ggtggtcaga cgagagatgg tattaatatt atttctgtag agggaaattc tgatgcagaa ttctctctga agaaccgcgt agttgccgga gcttatgatt acacactgca gaaaggaaac gagagtggga cagataataa gggatggtat ttaaccagtc atcttcccac atctgatacc cggcaataca gaccggagaa cggaagttat gctaccaata tggcactggc taactcactg ttcctcatgg atttgaatga gcgtaagcaa ttcagggcca tgagtgataa tacacagcct gagtctgcat ccgtgtggat gaagatcact ggaggaagaa gctctggtaa gcttaatgac gggcaaaata aaacaacaac caatcagttt atcaatcagc tcggggggga tatttataaa ttccatgctg aacaactggg tgattttacc ttagggatta tgggaggata cgcgaatgca aaaggtaaaa cgataaatta cacgagcaac aaagctgcca gaaacacact ggatggttat tctgtcgggg tatacggtac gtggtatcag aatggggaaa atgcaacagg gctctttgct gaaacttgga tgcaatataa ctggtttaat gcatcagtga aaggtgacgg actggaagaa gaaaaatata atctgaatgg tttaaccgct tctgcaggtg ggggatataa cctgaatgtg cacacatgga catcacctga aggaataaca ggtgaattct ggttgcagcc tcatttgcag gctgtctgga tgggggttac accggataca catcaggagg ataacggaac ggtggtgcag ggagcaggga aaaataatat tcagacaaaa gcaggtattc gtgcatcctg gaaggtgaaa agcaccctgg ataaggatac cgggcgggag ttccgtccgt atatagaggc aaactggatc cataacactc atgaatttgg tgttaaaatg agtgatgaca gccagttgtt gtcaggtagc cgaaatcagg gagagataaa gacaggtatt gaaggggtga ttactcaaaa cttgtcagtg aatggcggag tcgcatatca ggcaggaggt cacgggagca atgccatctc cggagcactg gggataaaat acagcttctg a GCGGCCGC (actcgagcaccacc)
pET with AIDA-1 signal, strep2 tag, and AIDA-1 (update 8/24/07)
(pet29b+ vector) (Nde1) - AIDA signal - insertion site with strep2 tag - AIDA1 sequence - stop codon - "Not1" (pet29b+vector)
(aaggagatata)CAT ATG att aaa tta aaa ttt ggt gtt ttt ttt aca gtt tta cta tct tca gca tat gcc tac gca cat gga aca cct GCTAGt tgg agc cac ccg cag ttc gaa aag gctagc gca ggt CTGCAG Gga ctt aatcctacaa aagaaagtgc aggtaatact cttaccgtgt caaattatac tgggacaccg ggaagtgtta tttctcttgg tggtgtgctt gaaggagata attcacttac ggaccgtctg gtggtgaaag gtaatacctc tggtcaaagt gacatcgttt atgtcaatga agatggcagt ggtggtcaga cgagagatgg tattaatatt atttctgtag agggaaattc tgatgcagaa ttctctctga agaaccgcgt agttgccgga gcttatgatt acacactgca gaaaggaaac gagagtggga cagataataa gggatggtat ttaaccagtc atcttcccac atctgatacc cggcaataca gaccggagaa cggaagttat gctaccaata tggcactggc taactcactg ttcctcatgg atttgaatga gcgtaagcaa ttcagggcca tgagtgataa tacacagcct gagtctgcat ccgtgtggat gaagatcact ggaggaagaa gctctggtaa gcttaatgac gggcaaaata aaacaacaac caatcagttt atcaatcagc tcggggggga tatttataaa ttccatgctg aacaactggg tgattttacc ttagggatta tgggaggata cgcgaatgca aaaggtaaaa cgataaatta cacgagcaac aaagctgcca gaaacacact ggatggttat tctgtcgggg tatacggtac gtggtatcag aatggggaaa atgcaacagg gctctttgct gaaacttgga tgcaatataa ctggtttaat gcatcagtga aaggtgacgg actggaagaa gaaaaatata atctgaatgg tttaaccgct tctgcaggtg ggggatataa cctgaatgtg cacacatgga catcacctga aggaataaca ggtgaattct ggttgcagcc tcatttgcag gctgtctgga tgggggttac accggataca catcaggagg ataacggaac ggtggtgcag ggagcaggga aaaataatat tcagacaaaa gcaggtattc gtgcatcctg gaaggtgaaa agcaccctgg ataaggatac cgggcgggag ttccgtccgt atatagaggc aaactggatc cataacactc atgaatttgg tgttaaaatg agtgatgaca gccagttgtt gtcaggtagc cgaaatcagg gagagataaa gacaggtatt gaaggggtga ttactcaaaa cttgtcagtg aatggcggag tcgcatatca ggcaggaggt cacgggagca atgccatctc cggagcactg gggataaaat acagcttctg a GCGGCCGC (actcgagcaccacc)
Biobricked OmpA with an NheI site at beginning of loop one
gggcgaattgggtaccgaattcgcggccgcttctagaatgaaaaagacagctatcgcgattgcagtggcactggctggtttcgctaccgtagcgcaggccgctccgaaagataacacctggtacactggtgctaaactgggctggtcccagtaccatgacactggtttcatcgctagcaatggcccgacccatgaaaaccaactgggcgctggtgcttttggtggttaccaggttaacccgtatgttggctttgaaatgggttacgactggttaggtcgtatgccgtacaaaggcagcgttgaaaacggtgcatacaaagctcagggcgttcaactgaccgctaaactgggttacccaatcactgacgacctggacatctacactcgtctgggtggcatggtatggcgtgcagacactaaatccaacgtttatggtaaaaaccacgacaccggcgtttctccggtcttcgctggcggtgttgagtacgcgatcactcctgaaatcgctacccgtctggaataccagtggaccaacaacatcggtgacgcacacaccatcggcactcgtccggacaacggcatgctgagcctgggtgtttcctaccgtttcggtcagggcgaagcagctccagtagttgctccggctccagctccggcaccggaagtacagaccaagcacttcactctgaagtctgacgttctgttcaacttcaacaaagcaaccctgaaaccggaaggtcaggctgctctggatcagctgtacagccagctgagcaacctggatccgaaagacggttccgtagttgttctgggttacaccgaccgcatcggttctgacgcttacaaccagggtctgtccgagcgccgtgctcagtctgttgttgattacctgatctccaaaggtatcccggcagacaagatctccgcacgtggtatgggcgaatccaacccggttactggcaacacctgtgacaacgtgaaacagcgtgctgcactgatcgactgcctggctccggatcgtcgcgtagagatcgaagttaaaggtatcaaagacgttgtaactcagccgcaggctactagttaaagcggccgctgcagagctccagcttttgttccc3'