IGEM:Harvard/2010/Team Allergy: Difference between revisions
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|AJ417553 | |AJ417553 | ||
|''CCTTGAATTCGCGGCCGCATCTAGA'' ATGTCGTGGCAAACATATGT | |''CCTTGAATTCGCGGCCGCATCTAGA'' ATGTCGTGGCAAACATATGT | ||
|''AAGGCTGCAGCGGCCGCTACTAGT'' | |''AAGGCTGCAGCGGCCGCTACTAGT'' AGCCTGATTGGTCTTCTTAA | ||
|''AAGGCTGCAGCGGCCGCTACTAGT'' ATGTCGTGGCAAACATATGT | |''AAGGCTGCAGCGGCCGCTACTAGT'' ATGTCGTGGCAAACATATGT | ||
|''CCTTGAATTCGCGGCCGCATCTAGA'' | |''CCTTGAATTCGCGGCCGCATCTAGA'' AGCCTGATTGGTCTTCTTAA | ||
|- | |- | ||
|D. Carota Dau C 1 | |D. Carota Dau C 1 |
Revision as of 11:30, 14 June 2010
Description
We are designing shRNA constructs against common allergens in fruits and vegetables.
Bibliography
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- Dodo HW, Konan KN, Chen FC, Egnin M, and Viquez OM. Alleviating peanut allergy using genetic engineering: the silencing of the immunodominant allergen Ara h 2 leads to its significant reduction and a decrease in peanut allergenicity. Plant Biotechnol J. 2008 Feb;6(2):135-45. DOI:10.1111/j.1467-7652.2007.00292.x |
- Chardin H, Mayer C, Sénéchal H, Wal JM, Poncet P, Desvaux FX, and Peltre G. Lipid transfer protein 1 is a possible allergen in Arabidopsis thaliana. Int Arch Allergy Immunol. 2003 Jun;131(2):85-90. DOI:10.1159/000070923 |
- San Miguel-Moncín M, Krail M, Scheurer S, Enrique E, Alonso R, Conti A, Cisteró-Bahíma A, and Vieths S. Lettuce anaphylaxis: identification of a lipid transfer protein as the major allergen. Allergy. 2003 Jun;58(6):511-7. DOI:10.1034/j.1398-9995.2003.00097.x |
- Salcedo G, Sanchez-Monge R, Diaz-Perales A, Garcia-Casado G, and Barber D. Plant non-specific lipid transfer proteins as food and pollen allergens. Clin Exp Allergy. 2004 Sep;34(9):1336-41. DOI:10.1111/j.1365-2222.2004.02018.x |
- Gajhede M, Osmark P, Poulsen FM, Ipsen H, Larsen JN, Joost van Neerven RJ, Schou C, Løwenstein H, and Spangfort MD. X-ray and NMR structure of Bet v 1, the origin of birch pollen allergy. Nat Struct Biol. 1996 Dec;3(12):1040-5. DOI:10.1038/nsb1296-1040 |
- Zuidmeer L, Salentijn E, Rivas MF, Mancebo EG, Asero R, Matos CI, Pelgrom KT, Gilissen LJ, and van Ree R. The role of profilin and lipid transfer protein in strawberry allergy in the Mediterranean area. Clin Exp Allergy. 2006 May;36(5):666-75. DOI:10.1111/j.1365-2222.2006.02453.x |
- Karlsson AL, Alm R, Ekstrand B, Fjelkner-Modig S, Schiött A, Bengtsson U, Björk L, Hjernø K, Roepstorff P, and Emanuelsson CS. Bet v 1 homologues in strawberry identified as IgE-binding proteins and presumptive allergens. Allergy. 2004 Dec;59(12):1277-84. DOI:10.1111/j.1398-9995.2004.00585.x |
- Musidlowska-Persson A, Alm R, and Emanuelsson C. Cloning and sequencing of the Bet v 1-homologous allergen Fra a 1 in strawberry (Fragaria ananassa) shows the presence of an intron and little variability in amino acid sequence. Mol Immunol. 2007 Feb;44(6):1245-52. DOI:10.1016/j.molimm.2006.06.004 |
- Breiteneder H and Ebner C. Molecular and biochemical classification of plant-derived food allergens. J Allergy Clin Immunol. 2000 Jul;106(1 Pt 1):27-36. DOI:10.1067/mai.2000.106929 |
- Singh MB and Bhalla PL. Genetic engineering for removing food allergens from plants. Trends Plant Sci. 2008 Jun;13(6):257-60. DOI:10.1016/j.tplants.2008.04.004 |
- Le LQ, Mahler V, Lorenz Y, Scheurer S, Biemelt S, Vieths S, and Sonnewald U. Reduced allergenicity of tomato fruits harvested from Lyc e 1-silenced transgenic tomato plants. J Allergy Clin Immunol. 2006 Nov;118(5):1176-83. DOI:10.1016/j.jaci.2006.06.031 |
- Gallo M and Sayre R. Removing allergens and reducing toxins from food crops. Curr Opin Biotechnol. 2009 Apr;20(2):191-6. DOI:10.1016/j.copbio.2009.03.005 |
- Lorenz Y, Enrique E, Lequynh L, Fötisch K, Retzek M, Biemelt S, Sonnewald U, Vieths S, and Scheurer S. Skin prick tests reveal stable and heritable reduction of allergenic potency of gene-silenced tomato fruits. J Allergy Clin Immunol. 2006 Sep;118(3):711-8. DOI:10.1016/j.jaci.2006.05.014 |
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- Gilissen LJ, Bolhaar ST, Matos CI, Rouwendal GJ, Boone MJ, Krens FA, Zuidmeer L, Van Leeuwen A, Akkerdaas J, Hoffmann-Sommergruber K, Knulst AC, Bosch D, Van de Weg WE, and Van Ree R. Silencing the major apple allergen Mal d 1 by using the RNA interference approach. J Allergy Clin Immunol. 2005 Feb;115(2):364-9. DOI:10.1016/j.jaci.2004.10.014 |
- Bhalla PL and Singh MB. Knocking out expression of plant allergen genes. Methods. 2004 Mar;32(3):340-5. DOI:10.1016/j.ymeth.2003.08.011 |
Primers and Sequences
name | GenBank Accession | forward sense primer | reverse sense primer | forward antisense primer | reverse antisense primer |
---|---|---|---|---|---|
pdk intron | AJ311872 | CCTTGAATTCGCGGCCGCATCTAGA tcttttttccttttagtata | AAGGCTGCAGCGGCCGCTACTAGT CAATCCAAATGTAAGATCAA | ||
GFP | AF218816.1 | CCTTGAATTCGCGGCCGCATCTAGA atggtgagcaagggcgagga | AAGGCTGCAGCGGCCGCTACTAGT gaagatggtgcgctcctgga | AAGGCTGCAGCGGCCGCTACTAGT atggtgagcaagggcgagga | CCTTGAATTCGCGGCCGCATCTAGA gaagatggtgcgctcctgga |
A. thaliana LTP1 | ATHSEQB | CCTTGAATTCGCGGCCGCATCTAGA ATGGCTGGAGTGATGAAGTT | AAGGCTGCAGCGGCCGCTACTAGT CAGCTGCACGGCCAGCGTTG | AAGGCTGCAGCGGCCGCTACTAGT ATGGCTGGAGTGATGAAGTT | CCTTGAATTCGCGGCCGCATCTAGA CAGCTGCACGGCCAGCGTTG |
Fra a 1A (Bet v 1) | DQ385511 | CCTTGAATTCGCGGCCGCATCTAGA ATGGGTGTTTACACTTATGA | AAGGCTGCAGCGGCCGCTACTAGT GTAGTCGATCTTCTCGATGT | AAGGCTGCAGCGGCCGCTACTAGT ATGGGTGTTTACACTTATGA | CCTTGAATTCGCGGCCGCATCTAGA GTAGTCGATCTTCTCGATGT |
L. sativa LTP 1.1 | EF101532.1 | CCTTGAATTCGCGGCCGCATCTAGA ATGGCAAGGATGGCAACGAT | AAGGCTGCAGCGGCCGCTACTAGT TGACACCACACTTGCCGGGG | AAGGCTGCAGCGGCCGCTACTAGT ATGGCAAGGATGGCAACGAT | CCTTGAATTCGCGGCCGCATCTAGA TGACACCACACTTGCCGGGG |
L. sativa LTP 1.2 | EF101531.1 | CCTTGAATTCGCGGCCGCATCTAGA GTGACATGTGGTCAGGTGGT | AAGGCTGCAGCGGCCGCTACTAGT CTGGATCCTATTGCAGTCGG | AAGGCTGCAGCGGCCGCTACTAGT GTGACATGTGGTCAGGTGGT | CCTTGAATTCGCGGCCGCATCTAGA CTGGATCCTATTGCAGTCGG |
CCTTGAATTCGCGGCCGCATCTAGA | AAGGCTGCAGCGGCCGCTACTAGT | AAGGCTGCAGCGGCCGCTACTAGT | CCTTGAATTCGCGGCCGCATCTAGA | ||
S. lycopersicum Lyc E 1.01 (profilin) | AJ417553 | CCTTGAATTCGCGGCCGCATCTAGA ATGTCGTGGCAAACATATGT | AAGGCTGCAGCGGCCGCTACTAGT AGCCTGATTGGTCTTCTTAA | AAGGCTGCAGCGGCCGCTACTAGT ATGTCGTGGCAAACATATGT | CCTTGAATTCGCGGCCGCATCTAGA AGCCTGATTGGTCTTCTTAA |
D. Carota Dau C 1 | Z84376.1 | CCTTGAATTCGCGGCCGCATCTAGA ATGGGTGCCCAGAGCCATTCAC | AAGGCTGCAGCGGCCGCTACTAGT GGTTTCAATGGATTCGATGA | AAGGCTGCAGCGGCCGCTACTAGT ATGGGTGCCCAGAGCCATTCAC | CCTTGAATTCGCGGCCGCATCTAGA GGTTTCAATGGATTCGATGA |