IGEM:IMPERIAL/2006/ProjectCalendar/2006-9-4: Difference between revisions

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**Have you already done some testing ? Is there a protocol ?
**Have you already done some testing ? Is there a protocol ?
**How promising is it ? Future work ?
**How promising is it ? Future work ?
*Other issues on testing ?


==Modelling==
==Modelling==
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*Do we have simulations using realistic values ?
*Do we have simulations using realistic values ?
*How likely our final construct is to work according to simulations ?
*How likely our final construct is to work according to simulations ?
*Other issues on modelling ?


==Doc & Presentation==
==Doc & Presentation==
*Is the wiki up to date according to the work done during the last two weeks ?
*Is the wiki up to date according to the work done during the last two weeks ?
*Have we started to work on the presentation of the project for the Jamboree ?
*Have we started to work on the presentation of the project for the Jamboree ?
*Other issues on documentation ?

Revision as of 04:08, 4 September 2006



Progress Report

Assemly

  • Define the status of each test construct (under construction, sequenced, validated, faulty, ready for testing, tested, characterized) -multiple choice possible-
    • Prey cell:
    • Prey cell with riboswitch:
    • Prey cell with Cre:
    • Predator sensing part (monocistronic):
    • Predator sensing part (polycistronic):
    • aiiA test construct:
    • Full Predator construct:
  • others ???
  • What is the current priority in terms of assembly process ? Why ?
  • Other issues ?

Testing

  • Define the status of each testing protocol (to be written, to be validated, validated, data collected, data analysed, faulty protocol) -multiple choices possible-
    • Prey cell:
    • Prey cell with riboswitch:
    • Prey cell with Cre:
    • Predator sensing part (mono):
    • Predator sensing part (poly):
    • aiiA test construct:
    • Full system:
  • aiiA from MIT:
  • What lead us to think that the MIT aiiA part is faulty ?
  • Have we tried to be in touch with other iGEM teams using it ?
  • We have received a new aiiA gene. Can we test it before trying to insert it into our construct ?
  • Chemostat
    • What is the medium to be used in the chemostat ? At which OD do you plan to operate ?
    • Which parts do we plan to test in Chemostat ? Protocols ? Do we know how to get the parameters of the part from the experiment ?
    • Have we done the growth curves of the parts we want to test in the chemostat ?
    • Do we have a final strategy to monitor the ratio between our two populations ?
    • Do we understand how the chemostat environment is going to modify our modelling approach ?
  • Biosensor
    • What is the name of the enzyme we are using ? reference ?
    • Have you already done some testing ? Is there a protocol ?
    • How promising is it ? Future work ?
  • Other issues on testing ?

Modelling

  • What is the status on the theoretical study of the system ?
  • Do we have simulations using realistic values ?
  • How likely our final construct is to work according to simulations ?
  • Other issues on modelling ?

Doc & Presentation

  • Is the wiki up to date according to the work done during the last two weeks ?
  • Have we started to work on the presentation of the project for the Jamboree ?
  • Other issues on documentation ?