IGEM:IMPERIAL/2006/project/Oscillator/project browser/Predator Construct: Difference between revisions

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__NOTOC__
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{| border="1" cellpadding="0" width="100%"
{| border="1" cellpadding="0" width="100%"
|-
|- style="background:#CCCCFF"
!height="25pt" width="80pt"| Super Parts
!height="25pt" width="80pt"| Super Parts
!colspan="2" | [[IGEM:IMPERIAL/2006/project/Oscillator/project browser/Full_System | Molecular Prey-Predator Oscillator]]
!colspan="2" | [[IGEM:IMPERIAL/2006/project/Oscillator/project browser/Full_System | Molecular Prey-Predator Oscillator]]
|-
|- style="background:#FF9966"
!height="25pt" width="80pt"|Actual Part
!height="50" width="80pt"|Actual Part
!colspan="2"| Logo of the Part  
!colspan="2"| Logo of the Part  
|-
|- style="background:#CCCCFF"
!height="25pt" width="80pt"|Sub Parts
!height="25pt" width="80pt"|Sub Parts
! [[IGEM:IMPERIAL/2006/project/Oscillator/project browser/Test_Sensing_Predator_Construct| Test Sensing Predator Construct]]  
! [[IGEM:IMPERIAL/2006/project/Oscillator/project browser/Test_Sensing_Predator_Construct| Test Sensing Predator Construct]]  
! [[IGEM:IMPERIAL/2006/project/Oscillator/project browser/Test_Killing_Predator_Construct| Test Killing Predator Construct]]  
! [[IGEM:IMPERIAL/2006/project/Oscillator/project browser/Test_Killing_Predator_Construct| Test Killing Predator Construct]]  
|}
|}
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*Specifications
==Motivations==
*Specifications
*This part is driving the molecular events associated with the '''predator''' in the [[IGEM:IMPERIAL/2006/project/Oscillator/Modelling/LV|Lotka-Volterra model]].
*Specifications
*This part is supposed to interface with the [[IGEM:IMPERIAL/2006/project/Oscillator/project_browser/Prey_Construct|'''prey-construct''']].
*To satify the Lotka-Volterra dynamic of the predator, this part has to fullfil two properties:
**'''promote the expression of the predator-molecule''' according to the prey and predator population.
**'''degrade the prey-molecule''' according to the population of prey and predator
*add links to other parts if necessary or other part of the wiki.
 
==Part interface==
 
{| border="0" width="100% align="center"
|-
|
{| border="1" cellpadding="15" width="100%"
|-
! style="background:#66CC99"| INPUTS !!style="background:#FF3333"| OUTPUTS
|-
|rowspan = "2" | Prey  || Predator growth
|-
| Prey killing
|}
||
[[Image:iGEM_IMPERIAL_PreadatorConstructSystemIcon.png|right|350px]]
|}
 
==Expected behavior and performances==
 
(try to write your specifications in tables. Here are just 2 examples)
{| border="1" width="100%"
Interface specifiactions
|-
! style="background:lightgrey"|Characteristics !! Prey !! Predator expression !! Predator Killing
|-
| Range || Sensitivity to the prey should at least match the dynamic range of the prey || To be characterized || To be characterized
|-
| Transfer function ||  n/a  ||  [[Image:IGEM_IMPERIAL_TransferFunctionPredator1.png|250px]]  ||  [[Image:IGEM_IMPERIAL_TransferFunctionPredator2.png|250px]]
|-
| Variability||  n/a    ||  population level + day-to-day variability low  ||  population level + day-to-day variability low   
|}
 
 
{| border="1" width="100%"
System level specifications
|-
! style="background:lightgrey" width="100pt" |Properties !! Comments
|-
| Range||
|-
| Transfer function ||
|-
| Latency ||
|-
| Robustness || 
|-
| Variability  || 
|-
| properties 3 || 
|-
| properties 4 || 
 
|}
 
==Open issues==
*Getting linear relationship is going to be challenging in a biological system.
*Saturation in the response may have to be taken into account (characterized and defined).

Revision as of 07:16, 19 October 2006

Super Parts Molecular Prey-Predator Oscillator
Actual Part Logo of the Part
Sub Parts Test Sensing Predator Construct Test Killing Predator Construct


Motivations

  • This part is driving the molecular events associated with the predator in the Lotka-Volterra model.
  • This part is supposed to interface with the prey-construct.
  • To satify the Lotka-Volterra dynamic of the predator, this part has to fullfil two properties:
    • promote the expression of the predator-molecule according to the prey and predator population.
    • degrade the prey-molecule according to the population of prey and predator
  • add links to other parts if necessary or other part of the wiki.

Part interface

INPUTS OUTPUTS
Prey Predator growth
Prey killing

Expected behavior and performances

(try to write your specifications in tables. Here are just 2 examples)

Interface specifiactions
Characteristics Prey Predator expression Predator Killing
Range Sensitivity to the prey should at least match the dynamic range of the prey To be characterized To be characterized
Transfer function n/a
Variability n/a population level + day-to-day variability low population level + day-to-day variability low


System level specifications
Properties Comments
Range
Transfer function
Latency
Robustness
Variability
properties 3
properties 4

Open issues

  • Getting linear relationship is going to be challenging in a biological system.
  • Saturation in the response may have to be taken into account (characterized and defined).
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