IGEM:IMPERIAL/2007/Projects/Biofilm Detector/Notes: Difference between revisions
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= | =Infector Detector: Notes= | ||
__NOTOC__ | __NOTOC__ | ||
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<li>[[IGEM:IMPERIAL/2007/Projects/Biofilm Detector/Design|Design]]</li> | <li>[[IGEM:IMPERIAL/2007/Projects/Biofilm Detector/Design|Design]]</li> | ||
<li>[[IGEM:IMPERIAL/2007/Projects/Biofilm Detector/Modelling|Modelling]]</li> | <li>[[IGEM:IMPERIAL/2007/Projects/Biofilm Detector/Modelling|Modelling]]</li> | ||
<li>[[IGEM:IMPERIAL/2007/Projects/Biofilm Detector/Implementation| | <li>[[IGEM:IMPERIAL/2007/Projects/Biofilm Detector/Implementation|Fabrication]]</li> | ||
<li>[[IGEM:IMPERIAL/2007/Projects/Biofilm Detector/TestingValidation|Testing/Validation]]</li> | <li>[[IGEM:IMPERIAL/2007/Projects/Biofilm Detector/TestingValidation|Testing]]</li> | ||
<li>[[IGEM:IMPERIAL/2007/Projects/Biofilm Detector/Data Analysis|Data Analysis]]</li> | |||
<li>[[IGEM:IMPERIAL/2007/Projects/Biofilm Detector/Validation|Validation]]</li> | |||
<li id="current">[[IGEM:IMPERIAL/2007/Projects/Biofilm Detector/Notes|Notes]]</li> | <li id="current">[[IGEM:IMPERIAL/2007/Projects/Biofilm Detector/Notes|Notes]]</li> | ||
<li>[[IGEM:IMPERIAL/2007/Projects/Biofilm Detector/References|References]]</li> | <li>[[IGEM:IMPERIAL/2007/Projects/Biofilm Detector/References|References]]</li> | ||
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<br style="clear:both"> | <br style="clear:both"> | ||
__TOC__ | <!--__TOC__--> | ||
==Making Biofilm== | |||
*Freshly-grown growth-phase E. coli ZK1056 culture is added to sterile medium to a concentration of 5 × 107 cells/mL. | |||
*Round 15 mm sterile glass coverslips are placed upright in the wells of a 24-well plate with sterile plastic stands | |||
*Add 1 mL of E. coli solution to each well. | |||
*The 24-well plate is immediately covered and transferred to a 30 °C incubator. | |||
==AHL produced in biofilms:== | |||
(Notes on the journal modeling AHL production in biofilms of the same bacterial population) | |||
AHL synthesis is subject to autoinduction in which production of AHLs operates | |||
as a positive feedback loop. | |||
<br> Assumptions made in the model: | |||
*All bacterial cells are physiologically identical with regard to size, shape and permeability of the cell membrane, as well as production and degradation rates of the signalling molecules | |||
*Bacterial population exhibit a standard logistic growth pattern | |||
*No metabolic or physiological lag is assumed | |||
*At very low Cbc, the net rate of AHL production, h(Cbc), is assumed to be determined solely by the difference between basal production, Bp, and degradation of AHLs | |||
* Degradation of AHLs is proportional to the concentration of AHL and occurs at a rate d*Cbc | |||
Not considered in the model: permeability constant a, which is characteristic of the bacterial cell membrane, the diffusability of a given AHL, and the viscosity of the cell and the biofilm | |||
Conclusions from the model: high concentrations of AHL inside cells could be achieved at very low population densities. Rapid rise in AHL concentration early in population growth, followed by a plateau, followed by another rise to a second plateau | |||
== | ==Biofilm detection using AHL as signals== | ||
http://aem.asm.org/cgi/reprint/67/2/575 | |||
== | |||
Latest revision as of 07:55, 26 September 2007
Infector Detector: Notes
Making Biofilm
- Freshly-grown growth-phase E. coli ZK1056 culture is added to sterile medium to a concentration of 5 × 107 cells/mL.
- Round 15 mm sterile glass coverslips are placed upright in the wells of a 24-well plate with sterile plastic stands
- Add 1 mL of E. coli solution to each well.
- The 24-well plate is immediately covered and transferred to a 30 °C incubator.
AHL produced in biofilms:
(Notes on the journal modeling AHL production in biofilms of the same bacterial population)
AHL synthesis is subject to autoinduction in which production of AHLs operates
as a positive feedback loop.
Assumptions made in the model:
- All bacterial cells are physiologically identical with regard to size, shape and permeability of the cell membrane, as well as production and degradation rates of the signalling molecules
- Bacterial population exhibit a standard logistic growth pattern
- No metabolic or physiological lag is assumed
- At very low Cbc, the net rate of AHL production, h(Cbc), is assumed to be determined solely by the difference between basal production, Bp, and degradation of AHLs
- Degradation of AHLs is proportional to the concentration of AHL and occurs at a rate d*Cbc
Not considered in the model: permeability constant a, which is characteristic of the bacterial cell membrane, the diffusability of a given AHL, and the viscosity of the cell and the biofilm
Conclusions from the model: high concentrations of AHL inside cells could be achieved at very low population densities. Rapid rise in AHL concentration early in population growth, followed by a plateau, followed by another rise to a second plateau