IGEM:IMPERIAL/2007/Projects/Cell by date/Implementation: Difference between revisions
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===Phase 1=== | ===Phase 1=== | ||
{| style="background:#FAF5FF; border:1px solid #FFDAB9; color:#000000" | {| style="background:#FAF5FF; border:1px solid #FFDAB9; color:#000000" | ||
|- style="background:#FFA07A" | |- style="background:#FFA07A" | ||
|| '''Chassis''' || | || '''Chassis''' || Phase 1 || Phase 2 || Phase 3 | ||
|- style="background:#FFDAB9" | |- style="background:#FFDAB9" | ||
|style="background:#FFA07A" | E.coli || X || || || | |style="background:#FFA07A" | E.coli || X || || || |
Revision as of 07:53, 27 July 2007
Cell by Date: Implementation
List of Required Protocols
Preliminary Preparation
Phase 1
Chassis | Phase 1 | Phase 2 | Phase 3 | |
E.coli | X | |||
In-Vitro | X | X | X | |
In-Veso | X | X | X |
Things to consider:
- Different types of promoters in different chassis
- Different threshold
- Different degradation time
- Different reporters
Preliminery Data
Protocols Required:
1. Degradation time
- Endy:RNA Half-life
- λ-Reporters
2. Rate of expression at constant temperature
- Fluorometer Reading
- Noting down colour change (photographs)
3. Range of Reporters
- Flurometer Reading
- RFP
- DsRed
- Beta-Galactosidase_Assay_(A_better_Miller)
- β-galactoside - requires subtrates X-GAL
- Luciferase - requires substrate ATP, O2, and luciferin
4. Range of promoters
Refer to List of Required Parts.
Data Analysis
Refer to Modelling Tab.
Validation of Model
1. Validate [Reporter]max and Vmax value
- Fluorometer Reading
- Noting down colour change (photographs)
2. Validate transient response using best promoters/reporters
- Fluorometer Reading
- Noting down colour change (photographs)