IGEM:IMPERIAL/2007/Projects/Cell by date/References

Cell by Date: References

• Introduction
• Specifications
• Design
• Modelling
• Implementation
• Testing/Validation
• Notes
• References

On Effect of Temperature

1. Broeze RJ, Solomon CJ, and Pope DH. Effects of low temperature on in vivo and in vitro protein synthesis in Escherichia coli and Pseudomonas fluorescens. J Bacteriol. 1978 Jun;134(3):861-74. DOI:10.1128/jb.134.3.861-874.1978 |
2. Anderson WA. Kinectics of beta-galactosidase synthesis in Escherichia coli at 5 C. J Bacteriol. 1975 Mar;121(3):907-16. DOI:10.1128/jb.121.3.907-916.1975 |
3. Jones PG, VanBogelen RA, and Neidhardt FC. Induction of proteins in response to low temperature in Escherichia coli. J Bacteriol. 1987 May;169(5):2092-5. DOI:10.1128/jb.169.5.2092-2095.1987 |
4. Herendeen SL, VanBogelen RA, and Neidhardt FC. Levels of major proteins of Escherichia coli during growth at different temperatures. J Bacteriol. 1979 Jul;139(1):185-94. DOI:10.1128/jb.139.1.185-194.1979 |
5. Thieringer HA, Jones PG, and Inouye M. Cold shock and adaptation. Bioessays. 1998 Jan;20(1):49-57. DOI:10.1002/(SICI)1521-1878(199801)20:1<49::AID-BIES8>3.0.CO;2-N |
6. Gualerzi CO, Giuliodori AM, and Pon CL. Transcriptional and post-transcriptional control of cold-shock genes. J Mol Biol. 2003 Aug 15;331(3):527-39. DOI:10.1016/s0022-2836(03)00732-0 |
7. Narberhaus F, Waldminghaus T, and Chowdhury S. RNA thermometers. FEMS Microbiol Rev. 2006 Jan;30(1):3-16. DOI:10.1111/j.1574-6976.2005.004.x |
8. Storch D and Pörtner HO. The protein synthesis machinery operates at the same expense in eurythermal and cold stenothermal pectinids. Physiol Biochem Zool. 2003 Jan-Feb;76(1):28-40. DOI:10.1086/367945 |

• Effect of Temperature on In Vivo Protein Synthetic Capacity in Escherichia coli
• Temperature dependence of RNA synthesis parameters in Escherichia coli.

T7 Kinetics

1. Kuzmine I and Martin CT. Pre-steady-state kinetics of initiation of transcription by T7 RNA polymerase: a new kinetic model. J Mol Biol. 2001 Jan 19;305(3):559-66. DOI:10.1006/jmbi.2000.4316 |

On Flurorescent Proteins

1. Wahlers A, Schwieger M, Li Z, Meier-Tackmann D, Lindemann C, Eckert HG, von Laer D, and Baum C. Influence of multiplicity of infection and protein stability on retroviral vector-mediated gene expression in hematopoietic cells. Gene Ther. 2001 Mar;8(6):477-86. DOI:10.1038/sj.gt.3301426 |

2. ImplementationOfEGFP

3. DsRed

4. EGFP promoter

Background Reading

1. Goldstein J, Pollitt NS, and Inouye M. Major cold shock protein of Escherichia coli. Proc Natl Acad Sci U S A. 1990 Jan;87(1):283-7. DOI:10.1073/pnas.87.1.283 |

1. September 2002 - Problem seems to have been already tackled by material scientists MatSciCellByDate
   
   1. Field name may be SSM (Stimuli Sensitive Materials) SSM
      
   2. Intelligent colling systems in addition to predictive microbiology could mean our system is unneccessary IntelligenCooling suggest refocus on Average Joe and food in his fridge
      
   3. Antimicrobial Agents have been developed which prevent the formation of spoiling microbes during transport AntiMicrob
      

On Predictive Microbiology

1. McMeekin TA and Ross T. Shelf life prediction: status and future possibilities. Int J Food Microbiol. 1996 Nov;33(1):65-83. DOI:10.1016/0168-1605(96)01138-5 |

2. T.A. McMeekin, Predictive microbiology: Quantitative science delivering quantifiable benefits to the meat industry and other food industries, Meat Science, Volume 77, Issue 1, September 2007, Pages 17-27

3. K. Koutsoumanis, P.S. Taoukis and G.J.E. Nychas, Development of a safety monitoring and assurance system for chilled food products, International Journal of Food Microbiology 100 (2005), pp. 253–260.

4. Borch E, Kant-Muermans ML, and Blixt Y. Bacterial spoilage of meat and cured meat products. Int J Food Microbiol. 1996 Nov;33(1):103-20. DOI:10.1016/0168-1605(96)01135-x |
5. Koutsoumanis K, Stamatiou A, Skandamis P, and Nychas GJ. Development of a microbial model for the combined effect of temperature and pH on spoilage of ground meat, and validation of the model under dynamic temperature conditions. Appl Environ Microbiol. 2006 Jan;72(1):124-34. DOI:10.1128/AEM.72.1.124-134.2006 |