IGEM:IMPERIAL/2007/Projects/Reporters: Difference between revisions
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====Green Fluorescent Protein==== | ====Green Fluorescent Protein==== | ||
*Gene name: ''gfp'' | *Gene name: ''gfp'' | ||
*Gene sequence: 5170 bp, [http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nuccore&id=155662 GenBank] | |||
*Part: [http://parts.mit.edu/registry/index.php/Part:BBa_E0040 BBa_E0040] | *Part: [http://parts.mit.edu/registry/index.php/Part:BBa_E0040 BBa_E0040] | ||
*'''Description''': | *'''Description''': | ||
*Response Time: ~1 hour | *Response Time: ~1 hour | ||
*Steady State Time: 8 hours | *Steady State Time: 8 hours | ||
*Concentration sensitivity: | *Concentration sensitivity: High | ||
*Advantages | |||
** | |||
*Disadvantages | |||
**Slow folding | |||
====Red Fluorescent Protein==== | ====Red Fluorescent Protein==== | ||
*Gene name: ''rfp'' | *Gene name: ''rfp'' | ||
*Part: [http://parts.mit.edu/registry/index.php/Part:??? ???] | *Part: [http://parts.mit.edu/registry/index.php/Part:??? ???] | ||
*'''Description''': | *'''Description''': | ||
*Response Time: ~8 hours | *Response Time: ~8 hours | ||
*Steady State Time: 12++ hours | *Steady State Time: 12++ hours | ||
*Concentration sensitivity: | *Concentration sensitivity: ??? | ||
*Advantages | |||
** | |||
*Disadvantages | |||
** |
Revision as of 07:26, 27 July 2007
Useful Reporters
GUS reporter system
- Description: Analyze the activity of a promoter (in terms of expression of a gene under that promoter) either in a quantitative way or through visualization of its activity in different tissues. The technique is based on beta-glucuronidase, an enzyme from the bacterium Escherichia coli. This enzyme when incubated with some specific colorless or not fluorescent substrates, can transform them into coloured or fluorescent products.
- Potential use: Fluorescent output
- Link: http://en.wikipedia.org/wiki/GUS_reporter_system
Bioluminescence
Advantages:
- More sensitive than other spectroscopy reporters, since there is often neglectable background bioluminescence.
- Relatively fast response
Disadvantages:
- Generally metabolically stressing, since key metabolic compounds are required in the generation of light.
- Usually requires the addition of substrates to be oxidized, which can limit the luminescence signal.
Firefly luciferase
- Gene name: lucff
- Description: Oxidizes luciferin with the help of oxygen, releases light as a product of oxidation.
- Enzyme: EC 1.13.12.7
- Reaction: Photinus luciferin + O2 + ATP <=> oxidized Photinus luciferin + CO2 + AMP + diphosphate + light
- Response Time: ~30 minutes
- Steady State Time: 4 hours
- Concentration sensitivity: Moderate
- Advantages:
- Fast response
- Can be initiated by addition of luciferin
- Disadvantages:
- Metabolic stress, ATP is consumed
- Substrate limiting
Bacterial luciferase
- Gene name: luxCDABE
- Description: 5 subunit protein which oxidizes FMN with the help of oxygen to generate FMN and H2 complex. This complex breaks down to form light.
- Enzyme: EC 1.14.14.3
- Reaction: RCHO + reduced FMN + O2 <=> RCOOH + FMN + H2O + light
- Response Time: ~30 minutes
- Steady State Time: 8 hours
- Concentration sensitivity: Moderate
- Advantages:
- Fast response
- Can be initiated by addition of substrate
- Disadvantages:
- Five subunits required
- Metabolic stress, FMN is consumed
- Substrate limiting
Questions: What substrate does this need?
Fluorescence Reporters
Advantages:
Disadvantages:
- Slow folding time, resulting in generally slow response
Green Fluorescent Protein
- Gene name: gfp
- Gene sequence: 5170 bp, GenBank
- Part: BBa_E0040
- Description:
- Response Time: ~1 hour
- Steady State Time: 8 hours
- Concentration sensitivity: High
- Advantages
- Disadvantages
- Slow folding
Red Fluorescent Protein
- Gene name: rfp
- Part: ???
- Description:
- Response Time: ~8 hours
- Steady State Time: 12++ hours
- Concentration sensitivity: ???
- Advantages
- Disadvantages