IGEM:IMPERIAL/2009/Encapsulation/Parts/Module3/Sequences
Details of thermoinducible system
cI repressor
Uploaded cI857 sequence
Genbank Accession No: E00770
Patent: JP 1986074585-A 8 16-APR-1986
Harvard's characterised clts part
BBa_K098997
By blasting with cI857 sequence online
Identities = 711/714 (99%)
nucleotides: 83-796
By blasting with pGW7
100% identity (since gene was taken from pGW7)
4148-4861 (supposed clts gene according to pGW7 plasmid)
clts from pGW7
The gene and plasmid which Harvard took from
https://www.lablife.org/ct?f=v&a=showvecinfo&vectorid=5079
the clts gene given as from 4148 to 4861 (same as the part Harvard characterised)
The order of the major features in the plasmid is: EcoRI - partial O - partial cro - lambda R promoter - lambda M promoter - cIts - rexA - rexB - lambda L promoter - HpaI / N - BamHI - SphI - SalI - pMB1 ori – ampR
By blasting with uploaded cI857 sequence
Identities = 870/873 (99%)
4045 to 4917 of pGW7 (27-899 of cI857 gene)
Other plasmids by blasting using Harvard's part
- Escherichia coli plasmid pGBG1
GenBank: AJ277653.1
Simple construct containing only TetA gene and cI gene
- pTR262
GenBank: X00166.1
- Other cloning vectors
pND707/706, pCL476/478, pPL450-452, pBT, pMM200
Other plasmids from papers
- pAW12
- pAWJ
lambda promoter
Registry part
BBa_R0051
Essentially the same as other lambda Pr promoters but stops after OR2.
Sequence:
(-49)TAACACCGTG CGTGTTGACT ATTTTACCTC TGGCGGTGAT AATGGTTGC (-1)
From pAW12
Allows normal growing at up till 30 degrees
Sequence:
TATCACCGCAAGGGATAAATATCTAACACCGTG CGTGTTGACT ATTTTACCTC TGGCGGTGAT AATGGTTGC
From pAWJ
Only difference from pAW12 is that it contains a mutation at 41C.
Supposedly allows normal growing at 36 degrees, but promoter strength is weakened.
Sequence:
TATCACCGCAAGGGATAAATATCTAACACCGCG CGTGTTGACT ATTTTACCTC TGGCGGTGAT AATGGTTGC
BLASTED with LacI binding site from Registry (R0010)
No significant similarity found, therefore presumably there is no crosstalk.
From pGW7
Contains both lambda R and lambda L.
Lambda R sequence detected by blasting with pAWJ. The sequence is the same (100% identity).