IGEM:Imperial/2010/Objectives: Difference between revisions
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*Decreasing absolute and relative tolerances is becoming accpeted as a solution to a negative concentrration problem (tomorrow there will be one more discussion on that with Matthieu) | *Decreasing absolute and relative tolerances is becoming accpeted as a solution to a negative concentrration problem (tomorrow there will be one more discussion on that with Matthieu) | ||
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*Modelling of | *Modelling of false positive in display protein is postponed as more research need to be done on the affinities etc. | ||
*Prsentation was given - feedback is to be implemented | *Prsentation was given - feedback is to be implemented | ||
*It was deduced that we should model the cells as alife, because of the slow cell death induced by addition of catechol | *It was deduced that we should model the cells as alife, because of the slow cell death induced by addition of catechol |
Revision as of 05:06, 3 September 2010
Objectives
Week 6
Day | Monday | Tuesday | Wednesday | Thursday | Friday |
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Date | 09 | 10 | 11 | 12 | 13 |
Objective | Find constants | Find protein production constants and TEV reaction rate constants | |||
Completion | We didn't manage to complete the task | The orders of magnitude established - ready to run simulations |
Week 7
Day | Monday | Tuesday | Wednesday | Thursday | Friday |
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Date | 16 | 17 | 18 | 19 | 20 |
Objective | Implementing the constant ranges in the output model. Comparing the results between the models. |
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Completion | The task is accomplished. However, unexplained oscillations are observed for some specific values |
We got rid of the oscillations in our model (by using ode15s instead of ode45). |
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Week 8
Day | Monday | Tuesday | Wednesday | Thursday | Friday |
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Date | 23 | 24 | 25 | 26 | 27 |
Objective | Test the protein display model and find to what kind of values it's sensitive to |
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Completion | We couldn't reach the testing as the first model "Display 1" was simulating reactions as if the were taking place inside the bacterial cell while in reality the take place outside. Then we hit an issue of defining the size of volume around the cell. We didn't manage to resolve that problem today. |
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Week 9
Day | Monday | Tuesday | Wednesday | Thursday | Friday |
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Date | 30 | 31 | 01 | 02 | 03 |
Objective | Bank holiday |
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Completion |
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Week 10
Day | Monday | Tuesday | Wednesday | Thursday | Friday |
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Date | 06 | 07 | 08 | 09 | 10 |
Objective | |||||
Completion |