IGEM:MIT/2008/Notebook/Yogurt/Notes

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(Linear Sequence/Design)
(Linear Sequence/Design)
Line 18: Line 18:
*potential eptiopes
*potential eptiopes
**FLAG (Asp-Tyr-Lys-Asp-Asp-Asp-Asp-Lys)
**FLAG (Asp-Tyr-Lys-Asp-Asp-Asp-Asp-Lys)
-
**C-myc (EQKLISEEDL)
+
**C-myc (E Q K L I S E E D L)
**              (- _ + _ _ _ - - - +)
**              (- _ + _ _ _ - - - +)
-
**HA (YPYDUPDYA: #2)
+
**HA (Y P Y D U P D Y A: #2)
**      (_ _ _ - _ _ - _ _)
**      (_ _ _ - _ _ - _ _)

Revision as of 11:48, 16 June 2008

Contents

JUN 10

JUN 16

Summary of individual tasks to research:

  1. S. Mutans metabolism pathway-Asad
  2. L. bulgaricus metabolism pathway-Allin
  3. secretion (full or partial)-John
  4. other secretion systems (introduction of)-Sara
  5. T7 as a promoter (L. bulgaricus)-Prarthna
  6. L. bulgaricus transformation/protocols-Derek
  7. binding assay protocols-Andrew
  8. epitope sequence

Linear Sequence/Design

Ex-promoter-RBS-ATG-signal-epitope-p1025-linker (TEV cleavage site)-GFP-His-TAATAA-termination-SP (see attached link for image of linear sequence)

  • Base pairs: 35-10-3-90-30-60-45-700-15-6-8
  • potential eptiopes
    • FLAG (Asp-Tyr-Lys-Asp-Asp-Asp-Asp-Lys)
    • C-myc (E Q K L I S E E D L)
    • (- _ + _ _ _ - - - +)
    • HA (Y P Y D U P D Y A: #2)
    • (_ _ _ - _ _ - _ _)
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